Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B12
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19617| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.060
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             30   0.98 
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)                  28   4.0  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   5.3  
SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)               28   5.3  
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_57352| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_35405| Best HMM Match : TraI (HMM E-Value=2.1)                      27   6.9  
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 27   9.2  
SB_280| Best HMM Match : MFS_1 (HMM E-Value=0.005)                     27   9.2  

>SB_19617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 310 MILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDN 161
           M++  +  + M D+ GD M+   T+ + MTD+  D M    N+ + M D+
Sbjct: 1   MMIDDSGDDMMIDDSGDDMMIDDTVDDMMTDDTVDDMMIDNNVDDMMIDD 50


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 334 IERNNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDN 161
           +  N C+ M       N MT N    M     + N+MT N    M    ++ NAM+ N
Sbjct: 234 MSHNACQGMQEIHHVSNAMTHNACQGMQEIHHVSNAMTHNACQGMQEIHHVSNAMSHN 291



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -3

Query: 334 IERNNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDN 161
           +  N C+ +       N M+ N    M     + N+MT N    M    ++ NAMT N
Sbjct: 216 MSHNACQGVQEIHHVSNAMSHNACQGMQEIHHVSNAMTHNACQGMQEIHHVSNAMTHN 273



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 325 NNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDN 161
           N C+ M       N MT N    M     + N+M+ N    M    ++ NAM+ N
Sbjct: 255 NACQGMQEIHHVSNAMTHNACQGMQEIHHVSNAMSHNACQGMQEIHHVSNAMSHN 309


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 286 NEMTDNC--GDSMIRSQTIQNSMTDNCNDSMNSSP---NIQNAMTDNCD*KNGSS 137
           N  TDN    +S   +    NS TDN + + NS+P   N  N+ TDN +  N SS
Sbjct: 232 NSYTDNSTSDNSKKDNSNPNNSNTDNSSSADNSNPDNSNSDNSNTDNSNSDNSSS 286


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 295 TFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDNCD*KNGSSIPN 128
           T  N  +DN   S   + +  N+++DN N S N++ +  N ++DN +  N +S  N
Sbjct: 158 TSDNNNSDNNNTSDNNNTSDNNNISDNNNTSDNNNTSDNNNISDNNNSDNNNSDNN 213


>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -3

Query: 286 NEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDNCD*KNGSSIPN*TVNYFD 107
           N+  DN G++        N   DN ++  N+  N  N   DN D  NG++  N   N +D
Sbjct: 115 NDSNDNNGNNDNNDNYDNNDNYDNNDNYNNNDNNDNNDNNDNYD-NNGNNGNNDNYNNYD 173

Query: 106 *N 101
            N
Sbjct: 174 NN 175



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 286 NEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDNCD*KNGSSIPN*TVNYFD 107
           N+  DN  +         N   DN +++ N+  N  N   DN D  NG++  N   N +D
Sbjct: 52  NDNNDNDDNYDNNDNNDNNDNNDNNDNNDNNDNNDNNDNNDNYD-NNGNNDNNDNYNNYD 110

Query: 106 *N 101
            N
Sbjct: 111 NN 112


>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
          Length = 605

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 334 IERNNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCND 206
           ++RNNCE +I    F     D C   +   Q  +NS T  C++
Sbjct: 556 LDRNNCEQLI--HAFITSKLDACNSLLSGLQEKKNSQTTACSE 596


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 283 EMTDNCGDSMIRSQTIQNSMTDNCN 209
           + TD+CGD      T+  S T NCN
Sbjct: 141 DFTDDCGDGTDEDPTLCASRTANCN 165


>SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 322 NCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMT 167
           NC++++   T  +++  NC    ++ Q +     DN  D  +S   I   +T
Sbjct: 429 NCDLLLKERTSVDKLMQNCNKISLKIQELLLERMDNNRDPNDSHATISGLVT 480


>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
          Length = 893

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 286 NEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDN 161
           N M DN GD+++      N   DN  D++       N M+DN
Sbjct: 808 NLMGDNVGDNLMGDNVGDNLTGDNVEDNLMGDNVGDNFMSDN 849


>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 247 SQTIQNSMTDNCNDSMNSSPNIQNAMTDNCD*KNGSS 137
           S    NS  +N NDS NSS N  N  ++N +  N S+
Sbjct: 14  SSNNNNSSNNNNNDSNNSSNNSSNNNSNNNNRNNSSN 50


>SB_57352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 355 GITPERRIERNNCEMMILSPTFQNEMTDNCG 263
           G TP+R++  +NC+    SP F   M++  G
Sbjct: 47  GKTPKRKLSLSNCDNASPSPCFLRTMSNESG 77


>SB_35405| Best HMM Match : TraI (HMM E-Value=2.1)
          Length = 332

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -3

Query: 325 NNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDN------CNDSMNSSPNIQNAMTD 164
           +  + ++   T ++ MTD+   S++   T ++ MTD+       +D+ N   +++N +TD
Sbjct: 210 DTAKSVMTGDTAKSVMTDDTAKSVMTGDTSKSVMTDDTAKPVMTDDARNFKVSMRNDLTD 269

Query: 163 NC 158
            C
Sbjct: 270 MC 271


>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 274 DNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDNCD 155
           DNC +    + +I +    +CND  NS+    NA T NC+
Sbjct: 213 DNCRNGHCLNMSITSLSLKSCNDLTNST---LNAFTYNCN 249


>SB_280| Best HMM Match : MFS_1 (HMM E-Value=0.005)
          Length = 480

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 331 ERNNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQNAMTDN 161
           ER N + M       NE+ +  G S  +  +  +S TDN  + ++      N  TDN
Sbjct: 174 ERKNIDKMADEKNANNELDEMVG-SHAKKDSDSSSFTDNVKEKIDRGQQNVNLDTDN 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,752
Number of Sequences: 59808
Number of extensions: 168110
Number of successful extensions: 593
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)