Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B12
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70752-1|CAA94754.1|  410|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z83129-10|CAM84807.1|  262|Caenorhabditis elegans Hypothetical p...    27   8.0  

>Z70752-1|CAA94754.1|  410|Caenorhabditis elegans Hypothetical
           protein F25B3.2 protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 334 IERNNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCND 206
           ++ N+ EM  +  TF ++    CG   +  + ++N+  DNC D
Sbjct: 338 VQCNSQEMGCIFDTFTDKAHGQCGIQTLSFKVLRNTGDDNCED 380


>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 235 QNSMTDNCNDSMNSSPNIQNAMTD 164
           QN + D CN  +N +P I+N   D
Sbjct: 155 QNRIPDPCNIGLNETPEIENRFKD 178


>Z83129-10|CAM84807.1|  262|Caenorhabditis elegans Hypothetical
           protein W06G6.15 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 156 SQLSVIAFWIFGLEFIESLQLSVIEFWIVWLRIIESPQLSVI 281
           + L +  F I G+  + S  L+ IE WIVW+ ++    LS++
Sbjct: 81  AHLPMFGFQIGGV--VRSWGLNAIELWIVWVWVVFVLLLSMV 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,456,397
Number of Sequences: 27780
Number of extensions: 130283
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)