Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B12
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    28   4.3  
At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit...    27   9.9  

>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 352 ITPERRIERNNCEMMILSPTFQNEMTDNCGDSMIR 248
           ++PER  +R   E  I+ P+F     +NCG   IR
Sbjct: 7   LSPERESKRQKKEPEIMEPSFPLLSPNNCGHWYIR 41


>At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit,
           putative similar to Skp1 GI:4959710 from [Medicago
           sativa]
          Length = 163

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 253 IRSQTIQNSMTDNCNDSMNSSPNIQNAM 170
           ++SQTI++ + D+C D+    PN+  A+
Sbjct: 26  VKSQTIKHMIEDDCADNGIPLPNVTGAI 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,873,405
Number of Sequences: 28952
Number of extensions: 118930
Number of successful extensions: 297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)