Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B11
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z77667-4|CAE17885.1|   91|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 1   QQSRGFGTNFRFP 39
           QQSRGFG NF+FP
Sbjct: 774 QQSRGFGNNFKFP 786


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 1   QQSRGFGTNFRFP 39
           QQSRGFG NF+FP
Sbjct: 772 QQSRGFGNNFKFP 784


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 1   QQSRGFGTNFRFP 39
           QQSRGFG NF+FP
Sbjct: 772 QQSRGFGNNFKFP 784


>Z77667-4|CAE17885.1|   91|Caenorhabditis elegans Hypothetical
           protein M04B2.6 protein.
          Length = 91

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 323 FSRGRLFSPLQ*FLIYNDD-RQSLAVXGEYARHSL 222
           + R   FSP+Q  L YNDD R  L V  + ++ S+
Sbjct: 47  YDRNCFFSPVQCMLTYNDDSRLPLVVTRKSSKRSI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,335,325
Number of Sequences: 27780
Number of extensions: 158430
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)