Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B11
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...    33   0.14 
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...    32   0.25 
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...    29   1.3  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    27   5.4  

>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 1   QQSRGFGTNFRFPXXXXXXXXXXXXXXDQPTFQEEGGDDDLY 126
           QQSRGFG+ FRF                  +    G DDDLY
Sbjct: 767 QQSRGFGSEFRFENSAGSGATTGVADPFATSAAAAGDDDDLY 808


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   QQSRGFGTNFRFPXXXXXXXXXXXXXXDQ-PTFQEEGGDDDLY 126
           QQSRGFG+ FRF               D   T      DDDLY
Sbjct: 767 QQSRGFGSEFRFDSTAGVGRTTGVAAADPFATSAAAADDDDLY 809


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
 Frame = +1

Query: 1   QQSRGFGTNFRFPXXXXXXX----XXXXXXXDQPTFQEEGG---DDDLY 126
           QQSRGFG+ FRFP                      F   GG   DDDLY
Sbjct: 766 QQSRGFGSEFRFPDAPTGTTGAFPGAAATVGGVDPFATSGGAADDDDLY 814


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 387 FYSYFMINHQSNNGIDAAPNVFLPRE 310
           F  Y+M+NHQ + G +A    F+P E
Sbjct: 375 FQDYYMMNHQHHGGGEAFNGGFVPGE 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,848,140
Number of Sequences: 28952
Number of extensions: 147687
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)