Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B09
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.58 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   7.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +1

Query: 91   VIPSYAKFL--TDNGIKSVLVGGTTG--EHMTLAVSDRKKVIAEWVKVSKTTGL 240
            ++PS  KF+  + N I   L   + G    +   +  +KK   EW++VS    L
Sbjct: 1492 IVPSAEKFIEVSSNSITLHLSAWSDGGCPMLYFVIEHKKKTSTEWIQVSNNVKL 1545


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 112 FLTDNGIKSVLVGGTTGE 165
           ++ D   + V +GGTTG+
Sbjct: 157 WMLDPSAEDVFIGGTTGK 174


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 267 RSTYLHLNM*PSGLRHFDPLGDH 199
           R++Y H    P+G  H  P G H
Sbjct: 38  RTSYQHHFNSPAGNAHTGPTGTH 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,604
Number of Sequences: 336
Number of extensions: 2943
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)