Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B09
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.1
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 27 2.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 3.2
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 3.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.2
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 26 4.2
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 26 4.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 5.6
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 25 9.8
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 9.8
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.8
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.8
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.8
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 9.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.8
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 281 TSASGAPPTCT*ICSPVVLDTLTHSAITFFLSDTASVICSPVVPPT 144
T+ + APPT + V+ TH T + T V + VVPPT
Sbjct: 104 TTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT 149
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +1
Query: 124 NGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAAYC 303
NG+K+ +VG + + +T+ +SD I + VK +V G P V D+A YC
Sbjct: 305 NGVKAPIVGRVSMDMLTVDLSD----IPD-VKPGD------EVIFWGTPELTVADIAKYC 353
Query: 304 QDVGADSLLT 333
D L+T
Sbjct: 354 SDTSPYELVT 363
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 280 VLDLAAYCQDVGADSLLTLPELY 348
V+ + Y QDV AD L +P+LY
Sbjct: 1116 VIVMGVYDQDVNADLSLRIPQLY 1138
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 334 LPELYFKPASVAECVSYVELVARAAPKLPVLYYHIPYRSGVDINAPAF 477
LP YF P + + L + LP +Y H+ GVD++A +F
Sbjct: 620 LPPKYFTPDLMTSRADQLVLKSFVKESLPEIYSHLEL-LGVDLDAISF 666
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.2
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = -3
Query: 371 SATDAGLKYNSGRVNNESAPTS*QYAARSKTSASGAPPTCT*ICSPVVLDTLTHSAITFF 192
SAT + +YN+ + S P+S ++ + T+A+ A + T + S V T T SA +
Sbjct: 268 SATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSA--SSTPLTS--VNSTTTTSASSTP 323
Query: 191 LSDTASVICSPVVPPTRTDLIPLSVRN 111
LS +S + T T PLS N
Sbjct: 324 LSSVSSANSTTA---TSTSSTPLSSVN 347
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 525 VLKTFKVWYPSGSLFYESRSIYIHPAPIRY 436
VL+T K W ++ + R+ Y++P +RY
Sbjct: 3 VLRTQKYWVNQFAINFACRNTYVNPMFLRY 32
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 91 VIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVK 219
+ ++++ + +NG+K + VG T++ S + I W K
Sbjct: 174 IFNAFSRIIKENGVKGLFVGADAAILRTVSGSSVQLPIYNWAK 216
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 79 VNYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKKVIA 207
+N + PSY ++N + G + GE++ + SD K++++
Sbjct: 821 INDDIYPSYVHLDSNNYAIAAARGDSDGENVFIYDSDIKRIVS 863
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 197 FFLSDTASVICSPVVPP 147
FFL D+ S++ +P +PP
Sbjct: 596 FFLEDSVSILKNPNIPP 612
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 46 PVFTPLNDDLSVNYSVIPSYAKFLTDNGIKS 138
PVF PL D Y + FL DN +++
Sbjct: 32 PVFAPLPPDYRSLYKKLYGQGAFLVDNPVEA 62
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 274 LVALHLLAPEYVAQWS*TL*PTRRSLSSCQTLLASYAL 161
L L LAP Y+ QWS + T S ++C L AL
Sbjct: 128 LTILKYLAPAYIRQWSISCLTT--STAACLLLALQMAL 163
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 28 PRGLMPPVFTPLNDDLSVNYS 90
P+ L PP+ + L+DD + YS
Sbjct: 591 PQQLPPPIHSHLSDDQHIQYS 611
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 457 PPRSYKVYDNKELVASEQPLRPIPRKK 377
P K+Y+N +L + P+ P P +K
Sbjct: 287 PKPEPKMYENSDLTPARTPVTPAPLEK 313
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 27/51 (52%)
Frame = +1
Query: 82 NYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTT 234
++ + YAK G+++ LV + E ++ + +V+ + ++SKT+
Sbjct: 67 SFFFVYEYAKARQKPGVRNHLVSASVAEVVSCGILAPAEVVRQRAQISKTS 117
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 187 DRKKVIAEWVKVSKTTGLHIQVQVG 261
++KK +++ V +SKT HI +++G
Sbjct: 1130 EKKKELSKQVPISKTNVGHIDIELG 1154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,468
Number of Sequences: 5004
Number of extensions: 50116
Number of successful extensions: 148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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