Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B09
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0046 + 10114402-10114535,10116438-10117365 47 1e-05
04_04_0873 - 28905240-28906061 45 4e-05
06_01_0288 - 2106113-2109055 31 0.81
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 30 1.4
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 29 2.5
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 29 3.3
09_06_0057 - 20567754-20568089,20568841-20569188,20569294-20569434 29 3.3
09_02_0243 - 6192324-6192443,6193246-6193374,6193528-6193695,619... 28 5.7
09_01_0162 + 2405662-2406033,2406086-2406460 27 7.5
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 7.5
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 27 10.0
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 46.8 bits (106), Expect = 1e-05
Identities = 44/174 (25%), Positives = 70/174 (40%)
Frame = +1
Query: 1 LKITMVVFTPRGLMPPVFTPLNDDLSVNYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLA 180
L+ + T ++ V TP D + S D G + V+VGGTTGE ++
Sbjct: 44 LRTSTADITSLRVITAVKTPYLPDGRFDLEAYDSLINMQIDGGAEGVIVGGTTGEGHLMS 103
Query: 181 VSDRKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGADSLLTLPELYFKPA 360
+ +I V + + G + + VG + L + Y K
Sbjct: 104 WDEHIMLIGHTVNCFGAK-VKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-T 161
Query: 361 SVAECVSYVELVARAAPKLPVLYYHIPYRSGVDINAPAFVKEATAWIPNFKGLK 522
S+ +S+ E V P P + Y++P R+G DI P V EA + N G+K
Sbjct: 162 SIEGLISHFEAV---LPMGPTIIYNVPSRTGQDI--PPAVIEAVSSFTNLAGVK 210
>04_04_0873 - 28905240-28906061
Length = 273
Score = 45.2 bits (102), Expect = 4e-05
Identities = 38/134 (28%), Positives = 59/134 (44%)
Frame = +1
Query: 121 DNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAAY 300
+ G + V+VGGTTGE ++ + +I V T + + G + +
Sbjct: 4 EGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTK-IKVVGNTGSNSTREAIHATEQ 62
Query: 301 CQDVGADSLLTLPELYFKPASVAECVSYVELVARAAPKLPVLYYHIPYRSGVDINAPAFV 480
VG + L + Y K SV +S+ E V P P + Y++P R+G DI P V
Sbjct: 63 GFAVGMHAALHINPYYGK-TSVEGLISHFEAV---LPMGPTIIYNVPSRTGQDI--PPAV 116
Query: 481 KEATAWIPNFKGLK 522
EA + N G+K
Sbjct: 117 IEAVSSFSNMAGVK 130
>06_01_0288 - 2106113-2109055
Length = 980
Score = 30.7 bits (66), Expect = 0.81
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 185 DTASVICSPVVPPTRTDLIPLSVRNLAYDGIT 90
D +S S +PP+ TDLI LSV NL+Y+ ++
Sbjct: 813 DLSSNDLSGSIPPSITDLINLSVLNLSYNDLS 844
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 409 PKLPVLYYHIPYRSGVDINAPAFVKEATAWIPN 507
P+L VL Y +P R+ V +NA A ++ W P+
Sbjct: 621 PRLRVLGYDVPERAMVLVNAWAICRDTAVWGPD 653
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 29.1 bits (62), Expect = 2.5
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 289 LAAYCQDVGADSLLTLPELYFKPASVAECVSYVELVAR--AAPKLPVLYYHIPYRSGVDI 462
+A Y D GAD L+ E F+ A A ++ R P+ P LY+ D
Sbjct: 161 VACYVHDDGADMLVF--ESLFEAAGFAR--RWIPFCRRHGVEPRAPELYFARGVDYLRDR 216
Query: 463 NAPAFVKEATAWIPNFKGLKYTSNDLSEGA 552
AP+FVK+ A ++ K N L+ A
Sbjct: 217 AAPSFVKDRRAMKREYEEFKVRMNHLAARA 246
>11_06_0738 -
26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Frame = +1
Query: 43 PPVFTPLNDDLSVNYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKK----VIAE 210
PP L+ +V + + Y F+ + + VLV G+ ++ + D K V
Sbjct: 642 PPTSMRLSQVRTVAFFGVLKYMPFVMEFRLIKVLVLHILGDEDSIGIFDLTKISELVRLR 701
Query: 211 WVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGADSLLTLPEL 345
++KV+ + + Q+ G P + L + +V D + LP L
Sbjct: 702 YLKVTSNVTVKLPTQMQGLPYLETLKIDGTISEVPTD--IYLPRL 744
>09_06_0057 - 20567754-20568089,20568841-20569188,20569294-20569434
Length = 274
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 190 RKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAA 297
R +V+AEW KV LH+ + G + +LDL A
Sbjct: 117 RDEVVAEWKKVQGHMSLHVHCHISGGHV--LLDLIA 150
>09_02_0243 -
6192324-6192443,6193246-6193374,6193528-6193695,
6193833-6194023,6194137-6194281,6195307-6195462
Length = 302
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 231 GLRHFDPLGDHFLPVRHC 178
G+ FDPL + F P RHC
Sbjct: 226 GVEKFDPLNEKFDPSRHC 243
>09_01_0162 + 2405662-2406033,2406086-2406460
Length = 248
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 148 GGTTGEHMTLAVSDRKKVIAEWVKVSKTTGLHI 246
GGT + +T V + K IAE+++ + GLH+
Sbjct: 112 GGTGLDSLTARVVESGKSIAEYIRGKENYGLHV 144
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 163 EHMTLAVSDRKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGADSLLTLPE 342
E + L + V+ + S T+ LH+ +Q+ G D+ D C DV D +
Sbjct: 231 EGLQLVALNPGLVLGPMLMPSPTSSLHMLLQILGGQRFDIDDFYIGCVDV-RDVAQSAVV 289
Query: 343 LYFKPASVAE--CVSYVELVARAAPKLPVLYYHIP 441
+Y ++ C+ +E + KL LY P
Sbjct: 290 IYENTSAQGRHLCIESIERLIDFHDKLAELYPEFP 324
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 121 DNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTTGLHIQVQVGGAPLADVL 285
D G+ + VGG G H++ D+ V +K K G QV A L +L
Sbjct: 55 DAGMSAAEVGGVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIIL 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,225
Number of Sequences: 37544
Number of extensions: 351449
Number of successful extensions: 888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -