Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B09
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)                  28   5.8  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = +1

Query: 277 DVLDLAAYCQDVGADSLLTLPELYFKPA-SVAECVSYVELVARAAPKLPVLYYHIPYRSG 453
           D +++ +     GAD+ L +   ++K + + A   ++   VA ++P +P++ Y +P  +G
Sbjct: 105 DTIEMTSRMASAGADAALVVTPCFYKGSMNAAALENHFTQVADSSP-IPIILYSVPANTG 163

Query: 454 VDINAPAFVKEATAWIPNFKGLKYTSND 537
           +D+     +  ++   PN  G+K +  D
Sbjct: 164 IDLPVECVINLSSH--PNIIGVKDSGGD 189


>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 221 TLTHSAITFFLSDTASVICSPVVPPTRTDLIPLSVRNLAYDGI 93
           TLT S +T  L+ T S    P+ PP  T+ +P ++  L YD I
Sbjct: 504 TLTMSPLTPLLTLTMS----PLTPPAHTNHVPPNIAPLTYDVI 542


>SB_51819| Best HMM Match : TGF_beta (HMM E-Value=1.9)
          Length = 696

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 319 DSLLTLPELYFKPASVAECVSYVELVARAAPKLPVLYYHIPYRSGVDIN 465
           D L+ LPE Y++P  + E V+    V  A      L+Y  P   GVD++
Sbjct: 1   DCLILLPEAYYRPTVLKEHVTNPCEVNSADQH--CLHYRYPNIDGVDVS 47


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 460 YPPR-SYKVYDNKELVASEQPLRPIPRK 380
           YPPR SY +     L  S QPLRP PR+
Sbjct: 121 YPPRQSYALQQTTPLHTS-QPLRPTPRR 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,269
Number of Sequences: 59808
Number of extensions: 380908
Number of successful extensions: 954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)