Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B09
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical...    29   2.9  
Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical ...    27   6.8  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical
           protein F49B2.6 protein.
          Length = 1082

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 55  TPLNDDLSVNYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTT 234
           T  ND L +N   +  Y K L D      LV      H T++  DR  ++ +   +SKT+
Sbjct: 720 TTSNDWLILNTGGV-GYFKVLYDPETYRKLVKQLQRNHTTISPIDRSMILVDSFDLSKTS 778

Query: 235 GLHIQV 252
            L+I V
Sbjct: 779 LLNISV 784


>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
           protein F49B2.6 protein.
          Length = 1082

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 55  TPLNDDLSVNYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTT 234
           T  ND L +N   +  Y K L D      LV      H T++  DR  ++ +   +SKT+
Sbjct: 720 TTSNDWLILNTGGV-GYFKVLYDPETYRKLVKQLQRNHTTISPIDRSMILVDSFDLSKTS 778

Query: 235 GLHIQV 252
            L+I V
Sbjct: 779 LLNISV 784


>Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical
           protein F29C12.5 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +1

Query: 271 LADVLDLAAYCQDVGADSLLTLPELYFKPASVAECVSYVELVARAAPK 414
           L +V+   ++  D+  + +L L  +Y +P  + +CV ++  ++  +PK
Sbjct: 355 LVEVMYGVSFIDDLTVEGVLHLAHMYDRPFPMQKCVEFLIDLSEKSPK 402


>AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical
           protein F13B6.1 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 239 SPVVLDTLTHSAITFFLSDTASVICSPVVPPTRTDLIPLSVRNL 108
           S +V++     +I +FL DT+    SPV   T+T  IP  + +L
Sbjct: 297 SRIVVEADGPYSIQYFLRDTSITSPSPVESTTKTSSIPQIIASL 340


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 354  FEIQLWKGQ*RIGSNILTVCRKV 286
            FEI LW+G   +   +LT+C+ V
Sbjct: 1089 FEIVLWRGWAGLAQKVLTLCKMV 1111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,046
Number of Sequences: 27780
Number of extensions: 281038
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)