Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B09
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)...    38   0.003
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)...    30   1.2  
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)...    30   1.2  
At2g34060.1 68415.m04170 peroxidase, putative similar to peroxid...    29   1.6  
At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    29   2.7  
At4g22920.1 68417.m03310 expressed protein                             28   3.6  
At3g22260.2 68416.m02814 OTU-like cysteine protease family prote...    28   3.6  
At3g22260.1 68416.m02813 OTU-like cysteine protease family prote...    28   3.6  
At4g00160.1 68417.m00016 F-box family protein contains F-box dom...    28   4.8  
At3g48320.1 68416.m05273 cytochrome P450 71A21, putative (CYP71A...    28   4.8  
At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A...    28   4.8  
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s...    28   4.8  
At1g52695.1 68414.m05951 phospholipase/carboxylesterase family p...    27   6.3  
At3g52680.1 68416.m05803 F-box family protein contains F-box dom...    27   8.3  

>At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)
           identical to dihydrodipicolinate synthase 2 (DHDPS2)
           [Arabidopsis thaliana] GI:11066382
          Length = 365

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 36/156 (23%), Positives = 61/156 (39%)
 Frame = +1

Query: 55  TPLNDDLSVNYSVIPSYAKFLTDNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTT 234
           TP   D   +             NG + V+VGGTTGE   ++  +   +I   V     +
Sbjct: 74  TPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGS 133

Query: 235 GLHIQVQVGGAPLADVLDLAAYCQDVGADSLLTLPELYFKPASVAECVSYVELVARAAPK 414
            + +    G     + +        VG  + L +   Y K  S+   +++ + V      
Sbjct: 134 -IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSIEGLIAHFQSVLHMG-- 189

Query: 415 LPVLYYHIPYRSGVDINAPAFVKEATAWIPNFKGLK 522
            P + Y++P R+G DI   A  K   +  PN  G+K
Sbjct: 190 -PTIIYNVPGRTGQDIPPRAIFK--LSQNPNLAGVK 222


>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 365

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
 Frame = +1

Query: 121 DNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTTGLHIQV--QVGGAPLADVLDLA 294
           +NG + V+VGGTTGE   ++  +   +I   V      G  I+V    G     + +   
Sbjct: 96  ENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTV---NCFGGRIKVIGNTGSNSTREAIHAT 152

Query: 295 AYCQDVGADSLLTLPELYFKPASVAECVSYVELVARAAPKLPVLYYHIPYRSGVDINAPA 474
                +G    L +   Y K  S+    ++ + V       P + Y++P R+  DI  P 
Sbjct: 153 EQGFAMGMHGALHINPYYGK-TSIEGMNAHFQTVLHMG---PTIIYNVPGRTCQDI--PP 206

Query: 475 FVKEATAWIPNFKGLK 522
            V    +  PN  G+K
Sbjct: 207 QVIFKLSQNPNMAGVK 222


>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 364

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
 Frame = +1

Query: 121 DNGIKSVLVGGTTGEHMTLAVSDRKKVIAEWVKVSKTTGLHIQV--QVGGAPLADVLDLA 294
           +NG + V+VGGTTGE   ++  +   +I   V      G  I+V    G     + +   
Sbjct: 95  ENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTV---NCFGGRIKVIGNTGSNSTREAIHAT 151

Query: 295 AYCQDVGADSLLTLPELYFKPASVAECVSYVELVARAAPKLPVLYYHIPYRSGVDINAPA 474
                +G    L +   Y K  S+    ++ + V       P + Y++P R+  DI  P 
Sbjct: 152 EQGFAMGMHGALHINPYYGK-TSIEGMNAHFQTVLHMG---PTIIYNVPGRTCQDI--PP 205

Query: 475 FVKEATAWIPNFKGLK 522
            V    +  PN  G+K
Sbjct: 206 QVIFKLSQNPNMAGVK 221


>At2g34060.1 68415.m04170 peroxidase, putative similar to peroxidase
           ATP20a {Arabidopsis thaliana} GP|9757794|dbj|BAB08292
          Length = 346

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 221 TLTHSAITFFLSDTASVICSPVVPPTRTDLIPLSVRNLAYD 99
           +L+ S+I FFL  T++++ SPV P T     P   R L+ D
Sbjct: 5   SLSLSSIFFFLFLTSTILISPVQPTTSKPPAPRPHRELSAD 45


>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 190 RKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAA 297
           R +V+AEW KV     LH+   + G     +LDL A
Sbjct: 304 RDEVVAEWRKVKSNMSLHVHCHISGDHF--LLDLIA 337


>At4g22920.1 68417.m03310 expressed protein
          Length = 268

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 190 RKKVIAEWVKVSKTTGLHIQVQVGGAPLADVLDLAA 297
           R +V+AEW KV     LH+   + G     +LDL A
Sbjct: 115 RDEVVAEWKKVKGKMSLHVHCHISGGHF--LLDLFA 148


>At3g22260.2 68416.m02814 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 245

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 337 EGSITNRLQHLDSMPQGPR 281
           EG +  RL HLDS+P  PR
Sbjct: 56  EGKLGKRLSHLDSIPHTPR 74


>At3g22260.1 68416.m02813 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 240

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 337 EGSITNRLQHLDSMPQGPR 281
           EG +  RL HLDS+P  PR
Sbjct: 56  EGKLGKRLSHLDSIPHTPR 74


>At4g00160.1 68417.m00016 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 522 LKTFKVWYPSGSLFYESRSIYIHPAPIRYMIIKNW*LRSSP 400
           L  +K+ YP+GS+FY+  S+ ++   I +  +    L  SP
Sbjct: 292 LSPWKITYPTGSIFYQLVSLEMYTREIDWWDLLTLMLEHSP 332


>At3g48320.1 68416.m05273 cytochrome P450 71A21, putative (CYP71A21)
           identical to Cytochrome P450 71A21 (SP:Q9STL2)
           [Arabidopsis thaliana]
          Length = 490

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 YHIPYRSGVDINAPAFVKEATAWIPN 507
           YHIP  + V INA A  +EA  W P+
Sbjct: 374 YHIPAGTQVMINAWAIGREAATWGPD 399


>At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A22)
           Identical to Cytochrome P450 71A22
           (SP:Q9STL1)[Arabidopsis thaliana]
          Length = 490

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 YHIPYRSGVDINAPAFVKEATAWIPN 507
           YHIP  + V INA A  +EA  W P+
Sbjct: 374 YHIPAGTQVMINAWAIGREAATWGPD 399


>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
           similarity to Cytochrome P450 71A24
           (SP:Q9STK9)[Arabidopsis thaliana];
          Length = 488

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 YHIPYRSGVDINAPAFVKEATAWIPN 507
           YHIP  + V INA A  +EA  W P+
Sbjct: 375 YHIPAGTHVMINAWAIGREAATWGPD 400


>At1g52695.1 68414.m05951 phospholipase/carboxylesterase family
           protein contains Pfam profile: PF02230
           phospholipase/carboxylesterase; supported by full length
           cDNA gi:26450919 from [Arabidopsis thaliana]
          Length = 231

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 424 LYYHIPYRSG-VDINAPAFVKEATAWIPNFKGLKYTSNDLSEG 549
           LYY   Y  G V IN P  V     W+P ++ L+Y  N+ + G
Sbjct: 127 LYYTSCYAFGWVPIN-PQIVIGINGWLPGWRRLEYNMNNTNFG 168


>At3g52680.1 68416.m05803 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 522 LKTFKVWYPSGSLFYESRSIYIHPAPIRYMIIKNW*LRSSP 400
           L   K+ YP+GS+FY+  S+ ++     +  +    L +SP
Sbjct: 295 LSPLKITYPTGSMFYQLVSLEMYTREAEWWNLLTLMLENSP 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,976
Number of Sequences: 28952
Number of extensions: 268123
Number of successful extensions: 699
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)