Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B08
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 141 2e-34
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 33 0.16
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 29 1.5
AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstrea... 29 1.5
U55376-4|AAA98006.1| 57|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 2.6
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 29 2.6
U97008-3|AAB52308.1| 380|Caenorhabditis elegans Hypothetical pr... 28 3.4
U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical pr... 28 3.4
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 28 4.6
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 28 4.6
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 27 6.0
U58750-2|AAB00642.1| 615|Caenorhabditis elegans Polo kinase pro... 27 6.0
AF059024-1|AAC14425.1| 615|Caenorhabditis elegans polo-like kin... 27 6.0
AF003136-5|AAK21372.1| 203|Caenorhabditis elegans Hypothetical ... 27 6.0
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 27 8.0
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 27 8.0
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 27 8.0
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 27 8.0
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 141 bits (342), Expect = 2e-34
Identities = 63/76 (82%), Positives = 71/76 (93%)
Frame = +2
Query: 257 RCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVAN 436
+CVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN
Sbjct: 68 KCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN 127
Query: 437 VSLLALYKEQKERPRS 484
SL+AL+K +KERPRS
Sbjct: 128 TSLIALFKGKKERPRS 143
Score = 106 bits (254), Expect = 1e-23
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = +3
Query: 81 ARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 248
ARK HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAKQPNSA
Sbjct: 10 ARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSA 65
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQG 130
RER+++ P+ R++ EE S+QSGA + + AAMG G
Sbjct: 72 RERQKKDREPKKREKQEEISLESLQSGAD--DEAMMAAMGFGG 112
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 5 ERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQGIQ 136
+RER+R R +R+ E E + ++ E SRA QG++
Sbjct: 316 DRERKRREKRELERMAEEEKKRLEKERLEAEQRSRATRRLQGVR 359
>AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstream,
human gene xe7related protein 7 protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 5 ERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQGIQ 136
+RER+R R +R+ E E + ++ E SRA QG++
Sbjct: 316 DRERKRREKRELERMAEEEKKRLEKERLEAEQRSRATRRLQGVR 359
>U55376-4|AAA98006.1| 57|Caenorhabditis elegans Hypothetical
protein F16H11.2 protein.
Length = 57
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSS 106
RERERER R R+R E E + + RE S
Sbjct: 19 REREREREREREREREREREREREREREREREKES 53
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSR 109
RERERER R R+R E E + + +ES+ +
Sbjct: 21 REREREREREREREREREREREREREREREKESNRK 56
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQ 127
RERERER R R+R E E + + RE R+
Sbjct: 15 REREREREREREREREREREREREREREREREREREKESNRK 56
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARE 97
RERERER R R+R E E + + RE
Sbjct: 11 RERERERERERERERERERERERERERERERE 42
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARE 97
RERERER R R+R E E + + RE
Sbjct: 13 RERERERERERERERERERERERERERERERE 44
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQGIQK 139
R R ++RH RSR+R + S + S+ S + + R ++ +K
Sbjct: 489 RTRRKDRHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKK 534
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESE-TRSIQSGAQARESSSRAAMGR 124
R+R R+R RSR+R E E TRS Q R+ S + R
Sbjct: 125 RDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSKSRSR 166
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRA 112
RER RER RSR R + RS S SR+
Sbjct: 137 RERSRERERTRSRSRSPQERDRSHSKSRSRSRSRSRS 173
>U97008-3|AAB52308.1| 380|Caenorhabditis elegans Hypothetical
protein C03G6.8 protein.
Length = 380
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3
Query: 444 F*LCTKNRRRGPGH 485
F LC KNRR GPGH
Sbjct: 320 FDLCRKNRRDGPGH 333
>U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical
protein C10G11.9 protein.
Length = 203
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 14 RERHIPRSRQRVEESETRSIQSGAQARESSSRAAM-GRQGIQKS 142
R R R S RS+ G+++R SSSR ++ GR G +S
Sbjct: 85 RRRRPSTRRSSSRRSVVRSVSRGSKSRRSSSRGSVYGRTGRSRS 128
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 14 RERHIPRSRQRVEESETRSIQSGAQARESSSRAAM-GRQGIQKS 142
R R R S RS+ G++ R SSSR ++ GR G +S
Sbjct: 85 RRRRPSTRRSSSRRSVVRSVSRGSKGRRSSSRGSVYGRTGRSRS 128
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSR 109
RER+RE H RS + R +S +++RE S R
Sbjct: 135 RERDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYR 170
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSR 109
RER+RE H RS + R +S +++RE S R
Sbjct: 261 RERDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYR 296
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 299 TAFVPRDGCLNHIEEN 346
T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668
>U58750-2|AAB00642.1| 615|Caenorhabditis elegans Polo kinase
protein 3 protein.
Length = 615
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 442 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 305
R++ +H DS+NV FT E C+ + ++ LN +T HE
Sbjct: 93 RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134
>AF059024-1|AAC14425.1| 615|Caenorhabditis elegans polo-like kinase
protein.
Length = 615
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 442 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 305
R++ +H DS+NV FT E C+ + ++ LN +T HE
Sbjct: 93 RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134
>AF003136-5|AAK21372.1| 203|Caenorhabditis elegans Hypothetical
protein F28B3.4 protein.
Length = 203
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +3
Query: 96 NHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAHS*GVSVYS 275
++RR QR ++ + H R +A A ++ G K+G + +P+ + VS S
Sbjct: 113 SNRRNQRRVTQDDDRYHSEIRVEAVHQALAEYSDG---RKLGPQPVKPHRRNGTSVSRSS 169
Query: 276 SLRTARK*QHSCRVMVASTTLRRT 347
S + +++ HS R M++ L ++
Sbjct: 170 SAQKSKRSNHSGRRMLSGKILGKS 193
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 75 RAARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 236
+A K + R +Q DKE ++A R A A + + EKV ++ KQ
Sbjct: 362 KALEKEKHERLQQEAKDKEDERARDKARKDAKAREEAKSREDVKAEKVAIDPKQ 415
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 180 GASHAKGIVLEKVGVEAKQPNSAH 251
G SH KGIVL+ V K+PNS +
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGN 95
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSR 109
+ERE+ER R +Q+ E E + + RE +R
Sbjct: 240 KEREKEREKEREKQKEREKEREKEREKEKKREEEAR 275
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 2 RERERERHIPRSRQRV---EESETRSIQSGAQARESSSRAAMGRQGIQKSP 145
RER+RER RSR R + E R +S + SR+ R+ ++SP
Sbjct: 87 RERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSP 137
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 2 RERERERHIPRSRQRV---EESETRSIQSGAQARESSSRAAMGRQGIQKSP 145
RER+RER RSR R + E R +S + SR+ R+ ++SP
Sbjct: 87 RERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSP 137
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGR 124
+ERE+ER R R++ E E R + + + S R R
Sbjct: 127 KEREKERQRERDREKRAEEEKRREEKRKEIQRSKRRRTRSR 167
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQGIQKS 142
R R R+R PR R R + R + R + R + GR+ +S
Sbjct: 89 RSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRS 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,588
Number of Sequences: 27780
Number of extensions: 249380
Number of successful extensions: 880
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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