Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B08
(515 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 143 7e-35
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 143 7e-35
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.3
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.3
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 4.3
At3g17900.1 68416.m02280 expressed protein 27 5.7
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 27 5.7
At5g47050.1 68418.m05798 expressed protein 27 7.5
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 27 7.5
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 7.5
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 7.5
At1g35560.1 68414.m04415 TCP family transcription factor, putati... 27 7.5
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 7.5
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 27 7.5
At5g49110.1 68418.m06079 expressed protein ; expression support... 27 9.9
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 9.9
At4g10550.1 68417.m01727 subtilase family protein contains simil... 27 9.9
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 143 bits (346), Expect = 7e-35
Identities = 64/76 (84%), Positives = 72/76 (94%)
Frame = +2
Query: 257 RCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVAN 436
+C RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+
Sbjct: 67 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126
Query: 437 VSLLALYKEQKERPRS 484
VSLLAL+KE+KE+PRS
Sbjct: 127 VSLLALFKEKKEKPRS 142
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +3
Query: 78 AARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 248
A RK R QRWADK++KK+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSA
Sbjct: 9 AGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 64
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 143 bits (346), Expect = 7e-35
Identities = 64/76 (84%), Positives = 72/76 (94%)
Frame = +2
Query: 257 RCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVAN 436
+C RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+
Sbjct: 67 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126
Query: 437 VSLLALYKEQKERPRS 484
VSLLAL+KE+KE+PRS
Sbjct: 127 VSLLALFKEKKEKPRS 142
Score = 76.6 bits (180), Expect = 9e-15
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +3
Query: 78 AARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 248
A RK R QRWADK +KK++ G WK PF +SHAKGIVLEK+G+EAKQPNSA
Sbjct: 9 AGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSA 64
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 117 WADKEFKKAHMGTRWKANPFGGASHAKG 200
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 117 WADKEFKKAHMGTRWKANPFGGASHAKG 200
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSR 109
+E+ERE+ + RS + + + +S++ + +E +R
Sbjct: 229 KEKEREKSVGRSSRHEDSPKRKSVEDNGEKKEKKTR 264
>At3g17900.1 68416.m02280 expressed protein
Length = 838
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 236 LLGFNANFFEDDALSMRCTTEGVRLPSR 153
LL F E D S+RC EG+ +P R
Sbjct: 450 LLSFRGVALERDRFSVRCGLEGICIPGR 477
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 372 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPFLMSCTR 265
P PA++T SFSS P S ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAA 115
R RE+E I ++ +R E E R+ Q +AR RAA
Sbjct: 154 RLREKEAEIEKATRRHVELEARATQIETEARAWQMRAA 191
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQG 130
R+RERE+++PR ++R E+ ++ E ++G
Sbjct: 641 RKREREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRG 683
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 281 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 442
K KK + VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 2 RERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQG 130
RERERER R R+R E E + + + R R RQG
Sbjct: 372 REREREREHDRERERQRERERQRARDRERER-ILERREKERQG 413
>At1g35560.1 68414.m04415 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
[Oryza sativa]
Length = 341
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 423 TTLNLTPGMSPTAWPLRPNPATNTSSFSSMWL 328
+T + T M P W L P PA +T+ S+ W+
Sbjct: 212 STRSRTQNMIPPMWALAPTPA-STNGGSAFWM 242
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 429 TLTTLNLTPGMSPTAWP 379
T TT+N +PG P +WP
Sbjct: 587 TKTTINTSPGKLPVSWP 603
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 5 ERERERHIPRSRQRVEESETRSIQSGAQARESSSRAAMGRQGIQK-SPHGYEMEGEPLRW 181
ER +E H+ S QR+ + E S+ S + E + G+ + +E E E +
Sbjct: 309 ERSQENHLDSSNQRILQQEPDSVPSTNKTAEKTETLLPQGLGLSSLEIYKHEEEDEDAYF 368
Query: 182 C 184
C
Sbjct: 369 C 369
>At5g49110.1 68418.m06079 expressed protein ; expression supported by
MPSS
Length = 1487
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -2
Query: 472 LLLFFVQS*KRHVCY-----LNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRH 308
LLLF +Q + V + +N +K +++ + + + F E C +LI L V + + RH
Sbjct: 1308 LLLFQIQEQQESVSHNSKGIINKIKQENKCIPDLI-FQIEDCERYLIQLSKVTKLNLLRH 1366
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 2 RERERERHIPRSRQR-VEESETRSIQSGAQARESSSRA 112
R+R+RERH R RQ + R +S + R+ + R+
Sbjct: 896 RDRDRERHRDRDRQHDLNRDRDRREKSSSHDRDDNDRS 933
>At4g10550.1 68417.m01727 subtilase family protein contains
similarity to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana]
Length = 778
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 117 WADKEFKKAHMGTRWKANPFGGASHAKG 200
W+ + A + T WK +PFG A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,472
Number of Sequences: 28952
Number of extensions: 235688
Number of successful extensions: 807
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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