Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B07
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   0.65 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   0.86 
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   2.0  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   2.6  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    26   2.6  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   3.5  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   6.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   6.1  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 331 TKHRYQVKGKHQLLALVEHHDKQLR 405
           T  +YQ + K++L AL+E + KQLR
Sbjct: 842 TSQKYQSELKNELYALLEQYKKQLR 866


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 137 LNIRYKRQIENNANLFIGQERMEQISGREPSRMDPNSEWLPNSI 268
           L+ RY   +E     F  + R   +   EP  +DPNS W PN +
Sbjct: 289 LSPRYCPSLEAKVTRFPHKAR--HLIWLEPEGLDPNSWWYPNGL 330


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 291 NYNCCPKGIEFGNHSELGSIRDGSRPEICSIRS 193
           +YN  P  + FGNH +LG   D SR E+  I S
Sbjct: 287 DYNV-PFAVNFGNHDDLG---DLSREELAKILS 315


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 178 FIYWTRTDGTNLRTGTVPNGSQFRMVTEFNTLWTTII 288
           FI W R D        V NGS F     F++LW  II
Sbjct: 84  FISWIRWDAIYFVDMAV-NGSLFEQEWAFSSLWPKII 119


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 158 QIENNANLFIGQERMEQISGREPSRMDPNSEWLPNSI 268
           QI+   N  IG+  +  +    PS +DP  E+ P+S+
Sbjct: 6   QIDETENFAIGKYAILFVIEVSPSMLDPVDEFTPSSL 42


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 199 DGTNLRTGTVPNGSQFRMVTEFNT 270
           +G   +T TVP   QF  V EFN+
Sbjct: 68  EGEKTKTETVPTRKQFPKVGEFNS 91


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 323 LHLIRKNEGYKIIIVVQRVLN 261
           L LI+  + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 122 VRRPALNIRYKRQIENNANLFIGQERMEQISGREPSRMD 238
           ++RP++    K+  EN +N     + ++Q S REPS+ +
Sbjct: 72  MKRPSVVKSRKKGSENISNFMEKTKAIKQKSRREPSKFE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,608
Number of Sequences: 5004
Number of extensions: 36936
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)