Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B07
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    29   1.9  
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695...    28   3.3  
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777           27   7.7  

>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 188 GQERMEQISGREPSRMDPNSEWLPNSIPF 274
           G E+   + GR PS   P+S W+P S+ F
Sbjct: 479 GDEQQACMLGRAPSPRSPSSPWMPFSMLF 507


>01_07_0378 -
           43167805-43169152,43169258-43169326,43169473-43169544,
           43169677-43169745,43169979-43171161,43171239-43171365
          Length = 955

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  LCALLILGFIASQATCIEYKIQKADRKQ 171
           +CAL+ +G + + A C  Y +  + RKQ
Sbjct: 530 ICALMGIGLLLAAALCYAYNVSVSGRKQ 557


>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
          Length = 323

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 133 CIEYKIQKADRKQREFIYWTRTDGTNLRTGTVP 231
           C   ++   DRKQ E + W    G + R G  P
Sbjct: 30  CRHGRVLLLDRKQNEIVLWDPDTGDHRRVGIPP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,001
Number of Sequences: 37544
Number of extensions: 220536
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)