Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B07
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)             33   0.12 
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         29   1.5  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_4564| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.5  
SB_27582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
          Length = 605

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 270 GIEFGNHSELGSIRDGSRPEICSIRS-CPINKFALFSICLLYL 145
           G+   +H+EL  +R      +  +RS C  +KFA+FS+ ++ L
Sbjct: 164 GVRSAHHAELSDVRSARHAALGDMRSACRAHKFAMFSLLMIIL 206


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 KTTRIYLLDKNGWNKSQDGNRPEWIP 242
           KT R YL+  NGWNK+ D    EW+P
Sbjct: 34  KTAR-YLIHYNGWNKNWD----EWVP 54


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +2

Query: 17  LYLYLCYKICHINYFYY----YNLKWISCARFLYWVL 115
           ++L+    +CH+NY Y+    +++ W+    ++Y V+
Sbjct: 121 IWLFHVSLLCHVNYMYHVIWLFHVSWLCHVNYMYHVI 157


>SB_4564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 28  SVLQNLSYXXXXXXXXEMDKLCALLILGFIASQATCIEYKIQKADRKQREFIY--WTRTD 201
           S +  LS          MD+  A+ +LG++ S  +    ++Q+ DRK R+  +  W +  
Sbjct: 42  SKILRLSPNAVELTVLSMDQF-AVPVLGYLMSTQSWPIAELQRIDRKSRKVNHREWRQAP 100

Query: 202 GTNLRTGTVPNGSQFRM 252
              + T   P G+ F M
Sbjct: 101 SRIVGTSVQPYGTCFNM 117


>SB_27582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 125 RRPALNIRYKRQIENNANLFIGQERMEQISGREP 226
           RR  L  R +R+++  ANL  G+ + ++I GREP
Sbjct: 73  RRQRLMARLQRKLDA-ANLDSGRAKKQRIEGREP 105


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 219  GNRPEWIPIQNGYRIQYPLDNNYNFIAFIFPN 314
            G+R  ++ IQNG +    ++ + +   ++FPN
Sbjct: 1122 GSRDSFVAIQNGRQWMLDIEESISIAFYVFPN 1153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,293
Number of Sequences: 59808
Number of extensions: 265708
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)