Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B07
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein ...    29   1.2  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    28   2.8  
At3g45070.1 68416.m04858 sulfotransferase family protein similar...    27   3.7  
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ...    26   8.6  

>At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 706

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 258 GNHSELGSIRDGSRPEICSIRSCPINKFALFSICLLYLIFNAGRLTG 118
           GN S  GS+ D  R E  S RSC  N  A+F  C ++++ +  +  G
Sbjct: 117 GNSSVKGSVEDAQRVESVSRRSC-YNPLAVF--CYVFVVEDCRKKEG 160


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 186 LDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 290
           LDK  W K+ + +  +       ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226


>At3g45070.1 68416.m04858 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 323

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 238 IHSGRFPS*DLFHPFLSNK*IRVVFYLPFVSYIQCRSPD 122
           +H  + PS D  HP LSN    +V Y     Y++  +PD
Sbjct: 83  LHRSKQPSHDDDHPLLSNNPHVLVPYFEIDLYLRSENPD 121


>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 727

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 244 IGIHSGRFPS*DLFHPFLSN 185
           + IH  RFP   LFHP LS+
Sbjct: 635 LAIHMPRFPDQYLFHPHLSH 654


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,205,406
Number of Sequences: 28952
Number of extensions: 187813
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)