Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B06
(292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 28 0.32
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 1.3
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 1.7
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 25 2.2
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 3.0
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 25 3.0
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 24 3.9
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 24 3.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 3.9
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 24 3.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 5.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 24 5.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 5.2
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 23 9.1
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 23 9.1
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 23 9.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 23 9.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 23 9.1
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 27.9 bits (59), Expect = 0.32
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = +2
Query: 44 SWPSALSAFXAFVKRDAEAASTGNAFSEI-----EKQICPKLKNK 163
SW SAL +F++ + +S GN F+ + +K++ KL++K
Sbjct: 98 SWNSALEKLTSFLEGGEDDSSLGNMFNSLQINKDQKKLVDKLRDK 142
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 1.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 58 FISVXRFCETRRRSSKHRQRV*RN*KANLSEIKKQVQENFKTDNVKKQ 201
++ V ET+ RSSK R+R KAN+ K K ++ Q
Sbjct: 151 YVLVIELLETQERSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQ 198
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 133 KANLSEIKKQVQENFKTDNVKKQFNNMVDDF*QIYEP 243
+A ++E KK+ + D+VKK FN+ + F Q EP
Sbjct: 470 EALVTEFKKRTESLSMPDHVKKVFNDELSKF-QHLEP 505
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 2.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 168 LHLFFNFGQICFSI 127
LH NFG+ICF++
Sbjct: 49 LHFHTNFGEICFNV 62
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 200 CFLTLSVLKFSCTCFLISDKF 138
C LTL+ LK+ CFL F
Sbjct: 226 CMLTLTDLKWQLECFLFGKAF 246
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 3.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 151 IKKQVQENFKTDNVKKQFNNMVDDF*QIY 237
I++Q+++N T+N++ N + F Q+Y
Sbjct: 81 IEEQIRQNAVTENMQSAIENHPEVFGQVY 109
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 139 NLSEIKKQVQENFKTDNVKKQFNNMVDD 222
N + I++ EN + N Q NN +DD
Sbjct: 323 NENTIRRLALENHELKNSNNQLNNHIDD 350
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.2 bits (50), Expect = 3.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 113 NAFSEIEKQICPKLKNKCRKTSKQTMLKNNLTTWWTIFN 229
N SEI C +++ R T ++NNLT W +F+
Sbjct: 448 NPDSEISIS-CKQIRTVNRIILSGTPIQNNLTELWNLFD 485
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 3.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -2
Query: 240 LINLLKIVHHVVKLF-FNIVCFEVFL-----HLFFNFGQICFSISLNALPVLAASASRF 82
LI + ++V +V + N F+ +L H F+ + + LP+LA AS+F
Sbjct: 492 LITITRLVSNVTSIAPINAFLFQEYLFPDLQHFLFDMNSRTRATYASCLPILAKQASKF 550
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 139 LLFNFAKRVAGACCFG 92
LL + AK AGACC G
Sbjct: 332 LLISTAKAAAGACCGG 347
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.8 bits (49), Expect = 5.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 230 KFMSQHESLTLKRQ 271
KF+SQHES K+Q
Sbjct: 510 KFLSQHESFVYKQQ 523
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 23.8 bits (49), Expect = 5.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 166 QENFKTDNVKKQFNNMVDD 222
QENF +DN+ + +N V++
Sbjct: 438 QENFDSDNLSESLDNSVEN 456
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 192 NIVCFEVFLHLFFNFGQICFSISLNALPVL 103
N++ EVFL F F IC +N+ P L
Sbjct: 1529 NVIFTEVFLPACFAFFTICAYTFMNSQPGL 1558
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 139 NLSEIKKQVQENFKTDNVKKQFNNMVDD 222
N+ + +QV E F N+K QF++ D
Sbjct: 403 NVPGVLRQVNELFIDHNIKSQFSDSRGD 430
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 23.0 bits (47), Expect = 9.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 275 YFGASELRIHAGS*IC*KSSTMLLNCFLTLSVLKFSCTCFLISDKF 138
YFG L + G I S LL L+ L+F +CF +S F
Sbjct: 263 YFGFLLLIVSLGYSIVVPSLGSLLRKCQILAGLQFVSSCFFLSSLF 308
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 170 KTSKQTMLKNNLTTWWTI 223
KT + +LK N +WWT+
Sbjct: 468 KTIAKYLLKLNGNSWWTV 485
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 9.1
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +2
Query: 122 SEIEKQICPKLKNKCRKTSKQTMLKNNLTTWWTIFNKFMSQHESLTLKRQSKKKQK 289
S+ EK K++ + + K + ++ T W T+ N+F S H + ++Q+
Sbjct: 251 SDAEKNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEF-SSHPAFNATSSETEQQQ 305
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 143 CPKLKNKCRKTSKQTMLKNNLTTWWTIFNKFMSQHESLTLKRQSKKKQ 286
C + ++ + ML + +TW N + + E LKR++ K+Q
Sbjct: 795 CKRCRDGKQFIRAPAMLYGDTSTWNHFTNPTLDRIEDHLLKREAGKQQ 842
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,112,920
Number of Sequences: 5004
Number of extensions: 18764
Number of successful extensions: 66
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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