Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B06
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1132 - 24530921-24532906                                         29   0.47 
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507...    28   1.1  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    27   2.5  
11_06_0098 - 20068488-20068616,20069039-20069257,20069431-200696...    26   4.4  
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767           26   4.4  
05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831,248...    26   4.4  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    26   4.4  
02_02_0733 + 13494794-13494917,13495077-13495181,13495582-13496867     26   5.8  

>08_02_1132 - 24530921-24532906
          Length = 661

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 80  VKRDAEAASTGNAFSEIEKQICPKLKNKCRKTSKQ 184
           VKRDAEA S  N +  IE   CP    K +   +Q
Sbjct: 225 VKRDAEAFSKSNMYDSIEPVSCPMELQKSQVIRQQ 259


>06_03_1406 -
           29949367-29949556,29949753-29949837,29950625-29950791,
           29951232-29952049
          Length = 419

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 204 KLFFNIVCFEVFLHLFFNFGQICFSISLNALPVLAASAS 88
           K FFN++  E+ L     FG+IC ++ +    VL+ S++
Sbjct: 310 KKFFNLLPGEIVLASLDGFGKICDAVEVAGTNVLSTSST 348


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 80  VKRDAEAASTGNAFSEIEKQICPKLKNKCRKTSKQTMLKNNLTTWWTIFNKFMSQHESLT 259
           VKRD    S G    +++    P+  N+     KQ+   +NL     + +   +Q ESLT
Sbjct: 635 VKRDDAKRSNG----DVQSDAAPEKMNEGLDLQKQSNQTSNLLVVGGVPDLQTNQSESLT 690

Query: 260 LKRQS 274
           +K+++
Sbjct: 691 IKKEA 695


>11_06_0098 -
           20068488-20068616,20069039-20069257,20069431-20069606,
           20069812-20070034
          Length = 248

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 152 LKNKCRKTSKQ-TMLKNNLTTW--WTIFNKFMSQHESLTLKRQSKKKQK 289
           L++  R+   + T LKN    W  +      + QH SL LK + K+K+K
Sbjct: 185 LRHSTRQIKNRFTHLKNYYIAWRYFKELQLMVPQHTSLVLKMKMKRKEK 233


>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
          Length = 1041

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 144 QICFSISLNALPVLAASAS 88
           ++CFS++L+ LP  AA+A+
Sbjct: 88  ELCFSVALDRLPAAAAAAA 106


>05_01_0317 -
           2481308-2481350,2481611-2481687,2481765-2481831,
           2482756-2482878,2482968-2483087,2483557-2483642,
           2483960-2484070,2484194-2484274,2484475-2484546,
           2484631-2484809,2485257-2485485
          Length = 395

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +2

Query: 50  PSALSAFXAFVKRDAEAASTGNAFSEIEKQICPK---LKNKCRKTSKQTMLKNNLTTWWT 220
           PS  S    FV + A AAST +A       + PK   ++ K  K  ++ +   ++     
Sbjct: 43  PSLPSDSLFFVDKPASAASTSSAADAAAADVAPKDIPVQRKIEKKREKVLYHESVLK--- 99

Query: 221 IFNKFMSQ-HESLTLKRQSKKKQK 289
             N ++     SLT K+  KK +K
Sbjct: 100 -RNPYVQPVPSSLTTKKDKKKSKK 122


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 9   KRLQNEQTFDYIPGRLLYQRSTLL*N 86
           K + +E+TFDYI G ++  R+ +L N
Sbjct: 263 KLIASEKTFDYIEGFVIINRTGILNN 288


>02_02_0733 + 13494794-13494917,13495077-13495181,13495582-13496867
          Length = 504

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 107 TGNAFSEIEKQICPKLKNKCRKTSKQTMLKNNLTTWWTIFNKFMSQHESLT 259
           TGN F +    + P      R   +   L ++  +WWT  N++M   + L+
Sbjct: 210 TGNPFHDYTDVLIPAFITAHRFAGEVQFLVSSFKSWWT--NRYMQIFQRLS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,591,669
Number of Sequences: 37544
Number of extensions: 102039
Number of successful extensions: 291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)