Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B06
(292 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 30 0.23
At5g47900.1 68418.m05917 hypothetical protein 28 0.94
At2g26170.1 68415.m03140 thromboxane-A synthase, putative / cyto... 27 2.9
At1g57943.1 68414.m06569 purine permease-related low similarity ... 26 3.8
At2g41510.1 68415.m05129 FAD-binding domain-containing protein /... 26 5.0
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 25 6.6
At5g48575.1 68418.m06008 hypothetical protein 25 8.8
At4g30350.1 68417.m04313 heat shock protein-related contains sim... 25 8.8
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 25 8.8
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 25 8.8
At2g35035.1 68415.m04298 urease accessory family protein (URED) ... 25 8.8
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 30.3 bits (65), Expect = 0.23
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 44 SWPSALSAFXAFV-KRDAEAASTGNAFSEIEKQICPKLKNKCRKTSKQTMLK 196
S P F F+ KRD EAA+ GN + + + + K+K +K +K+T ++
Sbjct: 52 SLPDLEEIFSEFLNKRDHEAAANGNTEANVVEAVENVKKDKKKKKNKETKVE 103
>At5g47900.1 68418.m05917 hypothetical protein
Length = 384
Score = 28.3 bits (60), Expect = 0.94
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 177 EVFLHLFFNFGQICFSISLNALPV 106
E+ L FNF +IC S+ +++PV
Sbjct: 16 EILLLFLFNFNEICISLRRSSIPV 39
>At2g26170.1 68415.m03140 thromboxane-A synthase, putative /
cytochrome P450 family protein simiar to Thromboxane-A
synthase (TXA synthase) (TXS) (SP:P47787) [Sus scrofa];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_15810029_gb_AY054283.1_
Length = 522
Score = 26.6 bits (56), Expect = 2.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 212 WWTIFNKFMSQHESL 256
WW + + F++QHE+L
Sbjct: 7 WWEVLDPFLTQHEAL 21
>At1g57943.1 68414.m06569 purine permease-related low similarity to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 398
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = -2
Query: 243 WLINLLKIVHHVVKLFFNIV--CFEVFLHLF----FNFGQICFS-ISLNAL-PVLAASAS 88
W + ++ +VH+V LF ++V C F+ LF F+F FS + AL + A S
Sbjct: 314 WAVGMIGLVHYVSGLFGDVVHMCASPFVALFVVLAFDFMDDVFSWPRIGALIGTVLALGS 373
Query: 87 RFTKAXNADKADGQEYNQMFVHFEV 13
F +K E NQ + EV
Sbjct: 374 YFYTLHKRNKKKMAELNQSENNVEV 398
>At2g41510.1 68415.m05129 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [gi:3882018] [gi:3441978]
Length = 575
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 15 LQNEQTFDYIPGRLLYQRSTLL*N 86
+ E+TFDY+ G ++ R+ LL N
Sbjct: 287 ISKEKTFDYVEGFVIINRTDLLNN 310
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 50 PSALSAFXAFVKRDAEAASTGNAFSEIEKQICPKLKNK 163
P + F F++ D +G+ +E+E+++ KLK K
Sbjct: 88 PRKKTNFEEFLEMDTPTVISGDQDAELERRLAKKLKIK 125
>At5g48575.1 68418.m06008 hypothetical protein
Length = 268
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 173 TSKQTMLKNNLTTWWTIFNKFMS---QHESLTLKRQSKKKQK 289
T++QT +K +T W + KF+ Q E+ T S K K
Sbjct: 225 TAQQTEIKKTITKWEQVTTKFVETAIQSETSTTSSSSPGKIK 266
>At4g30350.1 68417.m04313 heat shock protein-related contains
similarity to heat shock protein 101 [Triticum aestivum]
gi|6013196|gb|AAF01280
Length = 924
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/34 (23%), Positives = 20/34 (58%)
Frame = -2
Query: 144 QICFSISLNALPVLAASASRFTKAXNADKADGQE 43
++CFS++L LP + + + + + ++ + QE
Sbjct: 73 ELCFSVALERLPTTSTTTTTTSSSSSSSPSQTQE 106
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 249 SCWLINLLKIVHHVVKLFFNIVCFEVFLHLFFNFGQICFSISLNALPVLAASAS 88
S +LI L +HH KLFF + + L GQ S + LP+L S S
Sbjct: 665 SSFLIILEIPLHHGFKLFFETRGEDDIVELLCKIGQTQIP-SSDPLPILRGSGS 717
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 3 CGKRLQNEQTFDYIPGRLLYQRSTLL 80
CGK + FD +PGR + +T+L
Sbjct: 167 CGKPDSGRKVFDKMPGRSIVSWTTML 192
>At2g35035.1 68415.m04298 urease accessory family protein (URED)
contains Pfam profile: PF01774 urease accessory protein
UreD
Length = 294
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 136 ANLSEIKKQVQENFK 180
A L EI+KQVQEN K
Sbjct: 202 AKLKEIQKQVQENVK 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,618,690
Number of Sequences: 28952
Number of extensions: 90332
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -