Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B04
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                        171   2e-43
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   3e-11
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score =  171 bits (417), Expect = 2e-43
 Identities = 81/120 (67%), Positives = 91/120 (75%)
 Frame = +2

Query: 128 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 307
           ERTFLM+KPD V RGL+G II RFEKKGFKLV +KFV  SE+  ++HY  LA   F+ GL
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGL 698

Query: 308 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 487
            KYMS  PV  MVWEGL VVKT R MLG T+PA S PGTIRGD  I +GRNIIHGSD+VE
Sbjct: 699 CKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVE 758



 Score =  128 bits (308), Expect = 3e-30
 Identities = 67/109 (61%), Positives = 78/109 (71%)
 Frame = +2

Query: 128 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 307
           ERTF+MVKPDGVQRGLVG II+RFE+KGFKLV LK V  SEE L++HY+DLA  PF+PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186

Query: 308 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 454
           VK+MSSGPVV M                    ADS+PGTIRGD C+ +G
Sbjct: 187 VKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
 Frame = +2

Query: 128  ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 307
            + T  ++KP+ V+      I +R ++ GFK+   K V  S+EL  Q Y +   + FF GL
Sbjct: 673  QSTVAVIKPE-VEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGL 731

Query: 308  VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSD 478
              YMSSGP + MV    + V   R ++G  +P  ++   P +IR  L   V +N++HG  
Sbjct: 732  TDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPS 791

Query: 479  SVE 487
              E
Sbjct: 792  DPE 794



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
 Frame = +2

Query: 122 QRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 301
           Q +RT  +++PD + R    +I+ + ++ GF++   K +  + E  ++ YS+   + FF 
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFD 594

Query: 302 GLVKYMSSGPVVPMVWEGLNVVKTGRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIH 469
            LV  MSSGP++ +     + ++  R MLG        D  P ++R    ++    N +H
Sbjct: 595 TLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLH 654

Query: 470 GSDSVE 487
           GSD+ E
Sbjct: 655 GSDTAE 660


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 469 VDDITSNLDT*VSANGTGLRISWIGSTEHLTASFDDIQALPNHG 338
           VD    +LD  +S  G G+R+S IG+T   TA F++   +   G
Sbjct: 165 VDICRQSLDEAISICGPGVRMSTIGNTIR-TAQFEETVLITEDG 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,327
Number of Sequences: 59808
Number of extensions: 316861
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)