Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B04
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch... 180 5e-46
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ... 176 8e-45
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ... 175 1e-44
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 171 2e-43
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 77 5e-15
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 28 2.9
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /... 27 5.1
At5g02190.1 68418.m00140 aspartyl protease family protein contai... 27 9.0
>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
mitochondrial (NDK3) identical to Nucleoside diphosphate
kinase III, mitochondrial precursor (NDK III) (NDP
kinase III) (NDPK III) (SP:O49203) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain;
Length = 238
Score = 180 bits (438), Expect = 5e-46
Identities = 78/127 (61%), Positives = 101/127 (79%)
Frame = +2
Query: 107 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 286
E++A + ERTF+ +KPDGVQRGL+ II RFE+KGFKLVG+K + PS++ Q+HY DL
Sbjct: 82 EVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKE 141
Query: 287 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 466
RPFF GL ++SSGPV+ MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGRNII
Sbjct: 142 RPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNII 201
Query: 467 HGSDSVE 487
HGSD E
Sbjct: 202 HGSDGPE 208
>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
identical to identical to Nucleoside diphosphate kinase
I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
[Arabidopsis thaliana]; contains Pfam PF00334 :
Nucleoside diphosphate kinase domain;
Length = 169
Score = 176 bits (428), Expect = 8e-45
Identities = 78/120 (65%), Positives = 96/120 (80%)
Frame = +2
Query: 128 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 307
E+TF+M+KPDGVQRGL+G +I RFEKKGF L GLK + ++HY DL+S+ FF GL
Sbjct: 22 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 81
Query: 308 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 487
V Y+ SGPVV M+WEG NVV TGR+++GATNPA S+PGTIRGD I +GRN+IHGSDSVE
Sbjct: 82 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVE 141
>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
contains Pfam PF00334 : Nucleoside diphosphate kinase
domain; identical to nucleoside diphosphate kinase 4
(GI:11990430) [Arabidopsis thaliana]
Length = 237
Score = 175 bits (426), Expect = 1e-44
Identities = 78/127 (61%), Positives = 99/127 (77%)
Frame = +2
Query: 107 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 286
E +A + ERTF+ +KPDGVQRGL+ II RFE+KG+KLVG+K + PS+ Q+HY DL
Sbjct: 81 EALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKE 140
Query: 287 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 466
RPFF GL ++SSGPVV MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGRNII
Sbjct: 141 RPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNII 200
Query: 467 HGSDSVE 487
HGSD E
Sbjct: 201 HGSDGPE 207
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 171 bits (417), Expect = 2e-43
Identities = 73/120 (60%), Positives = 97/120 (80%)
Frame = +2
Query: 128 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 307
E T++MVKPDG+QRGLVG II RFEKKGFKL+GLK +EL ++HY DL+++ FFP L
Sbjct: 84 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 143
Query: 308 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 487
++Y++SGPVV M WEG+ VV + R+++G T+P ++PGTIRGDL +Q GRNI+HGSDS E
Sbjct: 144 IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPE 203
>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
protein contains Pfam PF00334 : Nucleoside diphosphate
kinase domain; similar to Nucleoside diphosphate kinase
homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
Length = 181
Score = 77.4 bits (182), Expect = 5e-15
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = +2
Query: 116 ADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 295
A ERT M+KPDGV I + GF +V +E Y + +SR F
Sbjct: 29 ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88
Query: 296 FPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPAD---SQPGTIRGDLCIQVGRNII 466
FP LV YM+SGPV+ MV E N V R ++G T+ S P +IR +N +
Sbjct: 89 FPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCV 148
Query: 467 HGSDS 481
HGSDS
Sbjct: 149 HGSDS 153
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 176 VGTIIERFEKKGFKLVGLKFVWPSEELLQQ 265
V +I EKKG K +F WPS E+L +
Sbjct: 205 VEEMIRISEKKGIKPQSAEFSWPSTEILSE 234
>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P97687
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 488
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 361 IQALPNHGNNRSRTHVFYKTREKRAGR*VTVMLLQQL 251
+Q LP++ ++ S TH+ K + K+A + + ++++ L
Sbjct: 6 VQILPDNQSSPSSTHMLTKPKSKKATKSIAMLIVASL 42
>At5g02190.1 68418.m00140 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease
Length = 453
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3
Query: 264 CCSNSSEGQTNFNPTNLKPFFSKRSMIVPTRPR*TPS 154
C S+SS ++F+ ++ S +++++P + R TP+
Sbjct: 21 CVSSSSSSSSSFSFSSFSSSSSSQTLVLPLKTRITPT 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,889,962
Number of Sequences: 28952
Number of extensions: 222023
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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