Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B03
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    27   8.8  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    27   8.8  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 232 LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 378
           L +D  ++ YYY+   +   ++ S RY    +     Y+N Y    TRY
Sbjct: 71  LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 634 VHRGNQSSCHTIRICLSVGTVRKSFQKCPRT 542
           V RG++  C  +  CL V T+R   +KC  T
Sbjct: 41  VVRGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 280 HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 381
           HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 634 VHRGNQSSCHTIRICLSVGTVRKSFQKCPRT 542
           V RG++  C  +  CL V T+R   +KC  T
Sbjct: 33  VVRGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,430
Number of Sequences: 27780
Number of extensions: 317815
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)