Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B02
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    29   0.70 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.6  

>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 426 MDLLGGIPLGQLNDESPELCARARSMGGGDWVAPSFGV 539
           M   G    G +N   P+LC R R   G   +A  FGV
Sbjct: 181 MGSTGSSATGVINTALPQLCQRVRKFAGDTPLAVGFGV 218


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 588 PGSTLRASSQRPLPTQPPQSLEQPS 514
           P S + ++ Q P+P  PP +  QPS
Sbjct: 267 PQSIINSAIQHPIPVLPPYAKNQPS 291


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 562  PTATANPATPKL--GATQSPPPILLARAHNSGDSSFN*PKGIPP 437
            P  T+ P  PK   GA  +PPP+    A +S   S   P G PP
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPV---PAPSSEIPSIPAPSGAPP 1084


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 589  ARQHPTRKQPTATANPATPKLGATQSPPP 503
            A  HP    P    + A P++ A   PPP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPP 1710


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 594 QTPGSTLRASSQRPLPTQPPQSLE 523
           +T  ST + +S  P+P+ PP +LE
Sbjct: 197 ETVPSTPQPASSLPIPSSPPAALE 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,326
Number of Sequences: 5004
Number of extensions: 57681
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)