Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B02
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 31 0.96
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 29 2.2
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 29 2.9
SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 28 5.1
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_10437| Best HMM Match : FMN_bind (HMM E-Value=9.8) 28 6.7
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1) 27 8.9
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 597 AQTPGSTLRASSQRPLPTQPPQ-SLEQPSHLLPYS*LAHTIPEIHHSIDLKVFPPTDP 427
AQTPGS + SS Q P +L+QP + P HT P H+ K P P
Sbjct: 85 AQTPGSQVTRSSHATTTIQRPSVTLQQPYSVHPSRHNNHT-PSFRHATTSKQRPSVTP 141
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 596 HRRQAAPYAQAANGHCQPSHPKAWSNPVTSSHTPSSRTQF 477
HR Q A + GH HP W+ +SSH P ++ +F
Sbjct: 867 HRAQRASSSHPT-GHKGQVHPIHWAQRASSSHPPGTKGKF 905
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 577 PTRKQPTATANPAT--PKLGATQ--SPPPILLARAHNSGDSSFN*PKGIPPNRSM*PS 416
P Q A A PA P +G+++ PPP+ AR SG S P +PP PS
Sbjct: 2125 PPMGQYGAPARPAMGPPPMGSSRYGPPPPMGPARHSPSGPSPLGAPPSVPPPMGAPPS 2182
>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 601 GSTDARQH--PTRKQPTATANPATPKLGATQSPPP 503
G+TD++ H T QP A + P GAT S PP
Sbjct: 317 GATDSQPHYGATDSQPHYGATDSQPHYGATDSQPP 351
>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 728
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Frame = -2
Query: 577 PTRKQPTATANPATPKLGA-----TQSPPPI 500
PT+ PTA P TPKLG +Q P PI
Sbjct: 404 PTQPTPTAKKTPKTPKLGTKRKRESQGPTPI 434
>SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 240 PEGQGCDFICPGDEALCIPARLICNGVVNCP 332
P+G+ D+ CPG++ C+ R C V P
Sbjct: 332 PKGKSNDWECPGEQKCCLDIRQGCFSVCTDP 362
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 28.3 bits (60), Expect = 5.1
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 4/156 (2%)
Frame = -2
Query: 601 GSTDARQHPTRKQPTATANPATPKLGATQSPPPILLARAHNSG----DSSFN*PKGIPPN 434
G D+ +P + +T NP +G+T +PP ++ N S+ N PKGI +
Sbjct: 43 GIMDSTPNPHKGIMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMGSTLNPPKGIMGS 102
Query: 433 RSM*PSRRKLSSEYVSLALCSSAVQYFLFPEVILGQFTTPLHINLAGMQSASSPGHIKSQ 254
P S+ + S + P+ I+G P H + G G + S
Sbjct: 103 TLNPPKGIMGSTPNPPKGIMGSTLNP---PKGIMGSTPNP-HKGIMGSSPNPPKGIMGST 158
Query: 253 P*PSGFIPPSVKRDVINEPSEFFGR**SPVHAILNA 146
P P P + + N E G +P I+ +
Sbjct: 159 PNP----PKGIMGSLPNPHKEIMGSSPNPPKGIMGS 190
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 179 MIKPCPCYFKCCSSRRCTSYENYSN 105
+I+PC C S+RRCT + YS+
Sbjct: 862 LIRPCVRLKVCMSARRCTQLDLYSH 886
>SB_10437| Best HMM Match : FMN_bind (HMM E-Value=9.8)
Length = 177
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 559 TATANPATPKLGATQSPPPILLARAHNSGDSSFN*PKGIPPN 434
T T NP+ PK T + P ++A+AH+S S + +P N
Sbjct: 5 TKTLNPSAPKENGTPTGP--VIAKAHDSSGISGSSHDKVPTN 44
>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
Length = 330
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 340 LQGIRNTGQPKNRELGRHTLRIVCVG 417
+Q + +TG P NRE+ R+T + C G
Sbjct: 14 IQSVTSTGIPLNREICRNTRKDYCEG 39
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 258 DFICPGDEALCIPARLICNGVVNCPN 335
+F C G CIP +C+G V+C N
Sbjct: 793 EFQC-GSSKQCIPESKVCDGSVDCTN 817
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186,992
Number of Sequences: 59808
Number of extensions: 464907
Number of successful extensions: 1480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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