Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B02
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58210.3 68418.m07288 hydroxyproline-rich glycoprotein family...    30   1.4  
At5g58210.2 68418.m07287 hydroxyproline-rich glycoprotein family...    30   1.4  
At5g58210.1 68418.m07286 hydroxyproline-rich glycoprotein family...    30   1.4  
At1g51940.1 68414.m05855 protein kinase family protein / peptido...    29   1.8  
At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pin...    29   2.4  
At1g15280.2 68414.m01829 glycine-rich protein                          29   2.4  
At1g15280.1 68414.m01828 glycine-rich protein                          29   2.4  
At3g17600.1 68416.m02246 auxin-responsive protein, putative simi...    28   4.2  
At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family...    28   4.2  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   5.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   5.5  
At2g45520.1 68415.m05661 expressed protein                             27   7.3  
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put...    27   9.6  
At5g27060.1 68418.m03229 disease resistance family protein conta...    27   9.6  
At2g30270.1 68415.m03685 expressed protein contains Pfam profile...    27   9.6  
At1g09550.1 68414.m01071 pectinacetylesterase, putative similar ...    27   9.6  

>At5g58210.3 68418.m07288 hydroxyproline-rich glycoprotein family
           protein 
          Length = 380

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 600 AAQTPGSTLRASSQRPLPTQPPQSLEQPSHLLPYS*LAHTIPEIHHSIDLKVFPPTDPCS 421
           ++  PG     SS  P+PT   ++L + S  +P    +H  P     ++ K      P  
Sbjct: 116 SSSVPGDASSHSSPAPVPTVEAKALSEVSPSVPADASSHLSPSPVPIVEAKALSEVSPSV 175

Query: 420 RADANYPQSMSP 385
            AD +   S +P
Sbjct: 176 PADTSSHFSPAP 187


>At5g58210.2 68418.m07287 hydroxyproline-rich glycoprotein family
           protein 
          Length = 380

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 600 AAQTPGSTLRASSQRPLPTQPPQSLEQPSHLLPYS*LAHTIPEIHHSIDLKVFPPTDPCS 421
           ++  PG     SS  P+PT   ++L + S  +P    +H  P     ++ K      P  
Sbjct: 116 SSSVPGDASSHSSPAPVPTVEAKALSEVSPSVPADASSHLSPSPVPIVEAKALSEVSPSV 175

Query: 420 RADANYPQSMSP 385
            AD +   S +P
Sbjct: 176 PADTSSHFSPAP 187


>At5g58210.1 68418.m07286 hydroxyproline-rich glycoprotein family
           protein 
          Length = 380

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 600 AAQTPGSTLRASSQRPLPTQPPQSLEQPSHLLPYS*LAHTIPEIHHSIDLKVFPPTDPCS 421
           ++  PG     SS  P+PT   ++L + S  +P    +H  P     ++ K      P  
Sbjct: 116 SSSVPGDASSHSSPAPVPTVEAKALSEVSPSVPADASSHLSPSPVPIVEAKALSEVSPSV 175

Query: 420 RADANYPQSMSP 385
            AD +   S +P
Sbjct: 176 PADTSSHFSPAP 187


>At1g51940.1 68414.m05855 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           contains protein kinases ATP-binding region signature,
           PROSITE:PS00107
          Length = 651

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +3

Query: 312 NGVVNCPNMTSGNKKYWTAEEQRARETYSEDSLRRLGYMDL-LGGIPLGQLNDESPELCA 488
           NG++N  N+T+G+  Y   +     E Y    +            +  G ++D+     A
Sbjct: 170 NGILNLDNITAGDLLYIPLDSVPG-EPYETSKINPPAPSPAPASSLANGNISDDQVNHTA 228

Query: 489 RARSMGGGDWVAPSFGVAGLAVAVGCLRVGCCLAS 593
           ++ S     W+    GV  LA+ V C+ V  CL S
Sbjct: 229 KSGSHVPYIWIVGGLGVV-LALLVLCILVCICLRS 262


>At1g68620.1 68414.m07841 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 336

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 409 CVGSATWICWGEYL 450
           CVGSA+W+C+ E+L
Sbjct: 101 CVGSASWLCYHEFL 114


>At1g15280.2 68414.m01829 glycine-rich protein
          Length = 585

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 598 STDARQHPTRKQPTATANPATPKLGATQSPPPILLARAHNSG 473
           S D  ++P        A P    LGA+ SPPP    +AHN G
Sbjct: 490 SEDGVRNPEMTWMPVLAGPGA--LGASYSPPPYAAHQAHNPG 529


>At1g15280.1 68414.m01828 glycine-rich protein
          Length = 584

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 598 STDARQHPTRKQPTATANPATPKLGATQSPPPILLARAHNSG 473
           S D  ++P        A P    LGA+ SPPP    +AHN G
Sbjct: 489 SEDGVRNPEMTWMPVLAGPGA--LGASYSPPPYAAHQAHNPG 528


>At3g17600.1 68416.m02246 auxin-responsive protein, putative
          similar to SP|O24410 Auxin-responsive protein IAA20
          (Indoleacetic acid-induced protein 20) {Arabidopsis
          thaliana}; contains Pfam profile: PF02309: AUX/IAA
          family
          Length = 158

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 91 SFSMTKGSSKDSNPSSPAESIGNLSVSETF 2
          S S    SS DS   SP+ES  NLS+S TF
Sbjct: 6  SCSSFSSSSVDSTKPSPSESSVNLSLSLTF 35


>At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 352 LFPEVILGQFTTPLHIN---LAGMQSASSPGHIKSQP*PSGFIPPSVKRDVINEPS 194
           +FP + + Q   P   N   +AG  S    G+    P P+G+ PP    +V N PS
Sbjct: 19  MFPFITISQTPCPYPCNPLPIAGTGSTQPAGYY---PQPTGYYPPPSSSNVPNYPS 71


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 578 PYAQAANGHCQPSHPKAWSNPVTSSH-TPS 492
           P+    N    PSHP   S+P T SH TPS
Sbjct: 100 PHTPPCNCGSPPSHPSTPSHPSTPSHPTPS 129


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 578 PYAQAANGHCQPSHPKAWSNPVTSSH-TPS 492
           P+    N    PSHP   S+P T SH TPS
Sbjct: 100 PHTPPCNCGSPPSHPSTPSHPSTPSHPTPS 129


>At2g45520.1 68415.m05661 expressed protein
          Length = 205

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 351 KKYWTAEEQRARETYSEDSLR 413
           KKYW A++Q+  +  +ED+LR
Sbjct: 118 KKYWEAKKQKKNKGKTEDTLR 138


>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, putative
            contains leucine rich repeat (LRR) domains, Pfam:PF00560;
            contains protein kinase domain, Pfam:PF00069
          Length = 953

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
 Frame = +3

Query: 312  NGVVNCPNMTSGN----KKYWTAEEQRA--RETYSEDSLRRLGYMDLLGGIPLGQLN--- 464
            +GVV    + SG     KK W+ EE RA   E  +  S+R    + LLG      L    
Sbjct: 769  SGVVYRVTIPSGETLAVKKMWSKEENRAFNSEINTLGSIRHRNIIRLLGWCSNRNLKLLF 828

Query: 465  -DESPE------LCARARSMGGGDWVAPSFGVAGLAVAVGCLRVGC 581
             D  P       L    +  GG DW A    V G+A A+  L   C
Sbjct: 829  YDYLPNGSLSSLLHGAGKGSGGADWEARYDVVLGVAHALAYLHHDC 874


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 228 LPSNVTSLTNRQNFSVDDKALSMLF 154
           LP N+TSL+N  +F   D A +  F
Sbjct: 329 LPPNITSLSNLMDFDASDNAFTGTF 353


>At2g30270.1 68415.m03685 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 182

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 21  KLPILSAGELGFESLDDPLV-IEKEKTRSIRIVFIGSASPARAAFKIAWTGLYHLPK 188
           KLP LS+G+LGF    + LV I ++ + S++ +   S  P  +  ++   G++ L K
Sbjct: 27  KLPGLSSGDLGFADSSEHLVFILRKSSSSLKSLLDSSGVPLFSISRL-HNGVWELHK 82


>At1g09550.1 68414.m01071 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 388

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 376 CSSAVQYFL--FPEVILGQFTTPLHINLAGMQS 284
           C+S ++ FL  FP+ I+ Q  TPL I  +G  S
Sbjct: 252 CTSHIKPFLCFFPQYIINQVKTPLFILNSGFDS 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,452
Number of Sequences: 28952
Number of extensions: 321502
Number of successful extensions: 1095
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)