Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B01
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   0.71 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.2  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   1.2  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    27   1.2  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    26   1.6  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   2.9  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   5.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   6.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   6.7  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    24   8.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   8.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    24   8.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   8.8  

>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 240 YKHPVFQRKLASPVPTEYDKTWTIL 314
           Y+ P F++ L  P+P  Y++ +T++
Sbjct: 156 YQEPAFEKLLPDPLPEPYNRPYTLV 180


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 240 YKHPVFQRKLASPVPTEYDKTWTILRI 320
           +  P+F RK  +   +E  K W ILRI
Sbjct: 57  FPKPIFARKFTTRQKSEDQKQWRILRI 83


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 249 PVFQ-RKLASPVPTEYDKTWTILRIAEITKVRGVHERY 359
           PV++ +KLA PVPT  DK W +L      KV+G+ +++
Sbjct: 33  PVYKGKKLADPVPTIEDK-WQLL--PAFLKVKGLVKQH 67


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 298 KPGPFYVSPKSPKSVEFMNVIDHFY 372
           K  PFY  P + + VEF ++++  Y
Sbjct: 16  KQSPFYAVPSNYEEVEFSSIVEPMY 40


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 90  LSDRCKTLSWFNTLAYIYLTTEV*DVF 10
           L +RC  L WF TL  + + T V +++
Sbjct: 121 LLERCHPLGWFETLPALCVATNVEELY 147


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -1

Query: 199 IWVSFPVLYLIPRN*FRSQPLQCLKSRQISIQSCKTLERSLQNAVLVQHS 50
           + +S P + +      R    +C K ++ +I+ CK + +SLQ+++  + S
Sbjct: 393 VCISIPAVGMRESEELRELEFKC-KQQKKTIEECKHISQSLQSSLTAESS 441


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 31  SKIYIGQSVEPRQRFAAIAQEFYKTELKSV-DFLNTEVAANEINSWVSNTTQGKIPKLVD 207
           S IY+G S+E  +R   +  E +  +LK+  + L+ + +  + +  V   +   + K +D
Sbjct: 402 SNIYVGHSIEDAER---LGNETFLPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLD 458

Query: 208 ADDMI 222
             D+I
Sbjct: 459 VYDII 463


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +1

Query: 49  QSVEPRQRFA-AIAQEFYKTELKSVDFLNTEVAANEINSWVSNTTQGKI---PKLVDADD 216
           Q + P + F  A+ +  Y +   S  FLN+ +A+ ++NS  SNT +  +      +  D 
Sbjct: 215 QPILPVRSFLDALGEPIYLSPTSSTYFLNSVLASLQLNS--SNTPESLLIDYQSKIPEDL 272

Query: 217 MIGMVVLIINTL 252
              ++ L +NTL
Sbjct: 273 SSSLLPLELNTL 284


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 226 MVVLIINTL--YFKGSWRHQFP 285
           +V +++NT+  Y   +W+H+FP
Sbjct: 352 VVSILLNTILVYMVSNWKHRFP 373


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 286 PNMTKPGPFYVSPKSPK 336
           P+   PG FY  P+SP+
Sbjct: 200 PSRLNPGKFYALPQSPQ 216


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 253 YFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEF 348
           Y+  SW  Q   N   P P  V P+ P    F
Sbjct: 60  YYDYSWSGQREANQQIPQPVPVQPRYPDEQNF 91


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 127 KSRQISIQSCKTLERSLQNAVLVQHSGLY 41
           +S   S+  C  L+  + NAV++ H+G+Y
Sbjct: 324 QSSSKSMDEC--LDTVITNAVIIDHTGIY 350


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 53   VLNQDSVLQRSLKSFTRLN*NLST 124
            +L ++S+LQ  L+S +R+N + ST
Sbjct: 1795 LLKENSILQADLQSLSRVNNSSST 1818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,654
Number of Sequences: 5004
Number of extensions: 35714
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)