BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B01
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 58 2e-09
01_06_0824 - 32243495-32244319,32244449-32244859 58 2e-09
05_06_0044 - 25150322-25151260 57 5e-09
11_02_0014 - 7352619-7352918,7353173-7353418 50 6e-07
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 50 6e-07
11_01_0750 - 6315126-6315896,6316371-6316784 50 8e-07
11_01_0767 + 6438648-6438809,6439146-6440000 48 2e-06
11_02_0012 - 7346282-7347136,7347234-7347593 48 2e-06
01_01_1152 + 9170628-9171899 48 2e-06
04_04_0619 + 26652923-26653267,26653440-26654273 48 3e-06
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 48 3e-06
11_01_0771 + 6453130-6454488 38 0.003
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 31 0.22
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 31 0.38
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 28 2.0
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 28 2.7
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 28 2.7
03_06_0057 - 31326067-31326097,31326453-31326517,31326960-313270... 28 2.7
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 28 2.7
04_04_1286 + 32387687-32387908,32388046-32389494 27 3.6
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448... 27 3.6
03_05_0288 + 22761801-22761877,22762495-22762556,22763501-227635... 27 4.7
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868... 27 6.2
08_02_0996 - 23404595-23405596 27 6.2
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 27 6.2
04_01_0427 - 5626614-5626625,5626716-5626773,5628650-5628756,562... 27 6.2
09_04_0427 - 17458974-17459129,17459227-17459335,17459753-174598... 26 8.2
08_01_0711 - 6275052-6276401 26 8.2
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 58.4 bits (135), Expect = 2e-09
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +1
Query: 37 IYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNT-EVAANEINSWVSNTTQGKIPKLV-DA 210
++ +++E + + A A YK ++ +F + + +IN WVS T IP+++ D
Sbjct: 100 VWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDG 159
Query: 211 DDMIGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMN 354
+ ++++N +YFKG W + FP + T G F+ S V FM+
Sbjct: 160 SVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMS 207
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 58.0 bits (134), Expect = 2e-09
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +1
Query: 19 LNFGSKIYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNT-EVAANEINSWVSNTTQGKIP 195
+ F + +++ ++ + +A + + Y+ E + V F + E A EIN W + T G+I
Sbjct: 99 VRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAGRIK 158
Query: 196 KLVDADDMIGMVVLII-NTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMN 354
+ D + ++ N LYFKG W +F T FY+ S FM+
Sbjct: 159 DFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFMS 212
>05_06_0044 - 25150322-25151260
Length = 312
Score = 56.8 bits (131), Expect = 5e-09
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Frame = +1
Query: 37 IYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNTEVAANEINSWVSNTTQGKIPKL----V 204
+++ S+ FA A +K ++S N A EIN W S+ T G + + +
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILSNSI 60
Query: 205 DADD--------MIGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFM 351
D DD I V + N+LYF W H F P++T+ G F+VSP V FM
Sbjct: 61 DDDDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 50.0 bits (114), Expect = 6e-07
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 151 EINSWVSNTTQGKIPKLVDADDMIGMVVLI-INTLYFKGSWRHQFPPNMTKPGPFYVSPK 327
+IN WVS T IP+++ + + L+ +N +YFKG W FP T G F+
Sbjct: 89 KINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDG 148
Query: 328 SPKSVEFM 351
S +V FM
Sbjct: 149 SSVNVRFM 156
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 50.0 bits (114), Expect = 6e-07
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 145 ANEINSWVSNTTQGKIPKLVDADDMIGMVVLII-NTLYFKGSWRHQFPPNMTKPGPFYVS 321
A+++NSWV T G I +++ + L++ N LYFKG+W +F + TK G F++
Sbjct: 214 ASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLL 273
Query: 322 PKSPKSVEFMN 354
FM+
Sbjct: 274 DGKSVQAPFMS 284
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 151 EINSWVSNTTQGKIPKLVDADDMIGMVVLII-NTLYFKGSWRHQFPPNMTKPGPFYVSPK 327
++NSWV T G I + + L++ N LYFKG+W +F + T+ G F++
Sbjct: 468 QVNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDG 527
Query: 328 SPKSVEFMN 354
FM+
Sbjct: 528 ESVQAPFMS 536
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 49.6 bits (113), Expect = 8e-07
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +1
Query: 19 LNFGSKIYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNT-EVAANEINSWVSNTTQGKIP 195
L F ++ S F +A Y + K DF N E A ++INSWV ++T+G +
Sbjct: 100 LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVT 159
Query: 196 KLVDADDMIGMVVLII-NTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFM 351
L+ A + L++ + LYF+G W + T FY + V F+
Sbjct: 160 TLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 48.4 bits (110), Expect = 2e-06
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 28 GSKIYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNTEVAAN-EINSWVSNTTQGKIPKLV 204
GS + S++P R A + YK +VDF N V A EIN+WV+ T+ I +++
Sbjct: 21 GSWLDASYSLKPAYRDAIVGT--YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVI 78
Query: 205 DADDM-IGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFM 351
+ + ++ N +YFKG W F + T F S V FM
Sbjct: 79 KPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFM 128
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 100 KTELKSVDFLNTEVAANE-INSWVSNTTQGKIPKLV-DADDMIGMVVLIINTLYFKGSWR 273
K ++ DF ++ + IN WVS T I +++ D G ++++N +YFKG W
Sbjct: 109 KPAYRAADFQRQPKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWS 168
Query: 274 HQFPPNMTKPGPFYVSPKSPKSVEFMN 354
+ FP T G F+ S FM+
Sbjct: 169 NPFPRERTTTGKFHRLDGSSVDAPFMS 195
>01_01_1152 + 9170628-9171899
Length = 423
Score = 48.0 bits (109), Expect = 2e-06
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +1
Query: 22 NFGSKIYIGQSVEPRQRFAAIAQEFYKTELKSVDFLNT-EVAANEINSWVSNTTQGKIPK 198
+F +++ + FA A Y + DF E A +N++VS+ T+G I
Sbjct: 118 SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRD 177
Query: 199 LVDADDM-IGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFM 351
++ + + VV++ N ++FKG+W F P+ T PF++ FM
Sbjct: 178 VLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 47.6 bits (108), Expect = 3e-06
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +1
Query: 19 LNFGSKIYIGQSVEPRQRFAAIAQEFYKTELKSVDFLN-TEVAANEINSWVSNTTQGKIP 195
L+F + I++ +S+ R F + A + +SVDF N AA E+N ++S T G++
Sbjct: 77 LSFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLN 136
Query: 196 KLVDADDMIGMVVLII-NTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMN 354
+ ++ N ++FK +W +F T+ F+ + +V F++
Sbjct: 137 NTISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFLS 190
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 47.6 bits (108), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 145 ANEINSWVSNTTQGKIPKLVDADDMIGMVVLII-NTLYFKGSWRHQFPPNMTKPGPF 312
A+++NSWV T G I +++ + L++ N LYFKG+W +F + TK G F
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEF 62
>11_01_0771 + 6453130-6454488
Length = 452
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 136 EVAANEINSWVSNTTQGKIPKLVDADDMIG--MVVLIINTLYFKGSWRHQFPPNMTKPGP 309
E A +IN+W T GK+ V +G V++ N +YFKG W F + T+ P
Sbjct: 171 EEARKQINAWARRAT-GKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKP 229
Query: 310 FY 315
FY
Sbjct: 230 FY 231
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 31.5 bits (68), Expect = 0.22
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 169 SNTTQGKIPKLVDADDMIGMVVLIINTLYFKGSWRHQFPPNM 294
+NT QGKIP ++ + + VL++N + G + + FPP++
Sbjct: 131 NNTLQGKIPDFTNSSN---LKVLLLNGNHLIGQFNNNFPPHL 169
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 30.7 bits (66), Expect = 0.38
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 55 VEPRQRFAAIAQEFYKTELKSVDFLNTEVAANEINSWVSNTTQGK 189
++P+ +AQ++ EL+ +F+ E+ EIN TQGK
Sbjct: 238 IKPKNDIPMLAQKYLDKELELEEFITHEMGFEEINRAFELLTQGK 282
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 55 VEPRQRFAAIAQEFYKTELKSVDFLNTEVAANEINSWVSNTTQGK 189
V+P+Q +A ++ EL+ F+ EV +IN+ QGK
Sbjct: 252 VKPKQDIPILADKYLNKELELDKFITHEVPLKDINTAFDLLLQGK 296
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -3
Query: 284 GNW*RQLPLKYRVFIINTTIPIMSSASTNLGIFPCVVFDTQELISFAATSVFKKSTDFNS 105
G W +P + V++ N PI+ + S+N + + +T +L+ A+ +T+ +
Sbjct: 65 GIWYNNIPRRTVVWVANRATPIIVNGSSNSSLPSLAMTNTSDLVLSDASGQIVWTTNLTA 124
Query: 104 V 102
V
Sbjct: 125 V 125
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 181 QGKIPKLVDADDMIGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMNV 357
+G++ K + DD+ V + N + G H F NM P PF+V +P + N+
Sbjct: 365 RGRVSKRREEDDL---VFFVNNNMKMHG---HGFNDNMEDPPPFFVRRWAPMLEKISNI 417
>03_06_0057 -
31326067-31326097,31326453-31326517,31326960-31327032,
31327134-31327185,31327320-31327366,31327694-31327728
Length = 100
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 348 ELHGLW*FRRYVEWSRFCHIRWELVTPASFEIQGVYNQHN 229
E HGLW R +C + +L T SF + VY N
Sbjct: 36 EAHGLWYSARPCSVCDYCCFQSQLNTDKSFSSENVYQNTN 75
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 199 LVDADDMIGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDHF 369
L D D + + +++ +G+ R P+ +PG FY P+SP+ + M ++ F
Sbjct: 245 LEDRHDFVEIETPVLSKSTPEGA-RDYLVPSRVQPGMFYALPQSPQLFKQMLMVSGF 300
>04_04_1286 + 32387687-32387908,32388046-32389494
Length = 556
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 222 WDGCVDYKHPVFQR 263
WD VDY HP+ QR
Sbjct: 539 WDNYVDYSHPLLQR 552
>04_04_0720 -
27543998-27544230,27544339-27544432,27544571-27544898,
27545387-27545850
Length = 372
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 82 IAQEFYKT--ELKSVDFLNTEVAANEINSWVSNTTQGKIPKLVDA 210
+ QEF K+ + K D + A+ + WV TTQ KI + +++
Sbjct: 285 VVQEFRKSFQDAKEADPNGSSSASPGVMKWVMETTQAKIKEFLES 329
>03_05_0288 +
22761801-22761877,22762495-22762556,22763501-22763564,
22767651-22767720,22767958-22768041
Length = 118
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 283 PPNMTKPGPFYVSPKSPKS 339
PP + + GPF V+P+ P+S
Sbjct: 4 PPPLPRGGPFVVAPRPPRS 22
>10_08_0921 +
21586034-21586229,21586464-21586576,21586768-21586875,
21586967-21587205,21587301-21587399,21587448-21587535,
21587617-21587750,21588274-21588362,21588718-21588751,
21588830-21588898,21589216-21589339
Length = 430
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 302 GFVIFGGNW*RQLPLKYRVFIINTTIPIMSSASTNLG 192
GF+ W R + + R FI +T +P+ AS +G
Sbjct: 321 GFIACSTRWKRLIQSRGRSFIFSTALPVPVVASVYVG 357
>08_02_0996 - 23404595-23405596
Length = 333
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 276 PVPTEYDKTWTILRIAEITKVRG 344
P+P YD WT+LR RG
Sbjct: 146 PLPAAYDDAWTVLRWVAADMQRG 168
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 293 IFGGNW*RQLPLKYRVFIINTTIPIMSSASTNL 195
++ G W Q+P+ V++ N PI S+S L
Sbjct: 57 LYVGVWYNQIPVHTYVWVANRNTPIKKSSSVKL 89
>04_01_0427 -
5626614-5626625,5626716-5626773,5628650-5628756,
5629202-5629276,5629365-5629557,5631122-5631207
Length = 176
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 184 GKIPKLVDADDMIGMVVLIINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMNV 357
G++ K + DD+ V +N + G ++ NM P PF+V +PK + N+
Sbjct: 75 GRVSKGREEDDL----VFFVNNMKLNG---YRSSDNMENPPPFFVRRWAPKLEKITNI 125
>09_04_0427 -
17458974-17459129,17459227-17459335,17459753-17459862,
17459981-17460226,17460591-17460680,17461325-17461602,
17461814-17461942,17462007-17462418
Length = 509
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 350 MNSTDFGDFGDT*NGPGFVIFGGNW*RQLP-LKYRVFII 237
MNS+D+ D GD +F NW + P K R F I
Sbjct: 199 MNSSDYSDVGDQITAEDTYVFLLNWFNRFPEYKGRDFYI 237
>08_01_0711 - 6275052-6276401
Length = 449
Score = 26.2 bits (55), Expect = 8.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -1
Query: 334 LVISAIRRMVQVLSYSVGTGDASFL*NTG------CL*STQPSQSCHQHRPIWVSF 185
+V++A++ +L +G GDASFL TG C+ P S +H W+ F
Sbjct: 219 IVLTAVKECTGILG--LGMGDASFLRQTGITKFSYCVPPRMPGYSYRRHS--WLRF 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,515,935
Number of Sequences: 37544
Number of extensions: 214838
Number of successful extensions: 519
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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