Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A24
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   213   2e-56
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   209   3e-55
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.1  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   4.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.3  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  213 bits (520), Expect = 2e-56
 Identities = 120/185 (64%), Positives = 134/185 (72%)
 Frame = +2

Query: 38  TTTDKASAHLVGGAKKVIISAPSGPDAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLA 217
           TT + ASAHL GGAK+VIISAPS  DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLA
Sbjct: 103 TTKETASAHLKGGAKRVIISAPS-KDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLA 161

Query: 218 KVIHDNFEIIEGLMTTVHATTATQKEWLNWTLLGKTGXGGPAMAVGLRNQQNIIPASTGA 397
           KVI+D F I EGLMTTVHATTATQK     T+ G +         G     NIIP+STGA
Sbjct: 162 KVINDTFGIEEGLMTTVHATTATQK-----TVDGPSKKDWRG---GRGASANIIPSSTGA 213

Query: 398 LLKLSAKSFHKLNGKLTGMAFRVPVAXVSVVDLTVRLGXPASYEAIKQKVKEAA*GPLKG 577
             K   K    LNGKLTGMAFRVP   VSVVDLTV+L  P +YE IK  +K A+ GP+KG
Sbjct: 214 -AKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKG 272

Query: 578 ILGYT 592
           +LGYT
Sbjct: 273 VLGYT 277



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 3   GAEYVVESTGV 35
           GAEYV+ESTGV
Sbjct: 91  GAEYVIESTGV 101


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  209 bits (510), Expect = 3e-55
 Identities = 118/185 (63%), Positives = 133/185 (71%)
 Frame = +2

Query: 38  TTTDKASAHLVGGAKKVIISAPSGPDAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLA 217
           TT + ASAHL GGAK+VIISAPS  DAPM+VVGVN E ++PS KVISNASCTTNCLAPLA
Sbjct: 103 TTQETASAHLKGGAKRVIISAPS-KDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLA 161

Query: 218 KVIHDNFEIIEGLMTTVHATTATQKEWLNWTLLGKTGXGGPAMAVGLRNQQNIIPASTGA 397
           KVI+D F I EGLMTTVHATTATQK     T+ G +         G     NIIP+STGA
Sbjct: 162 KVINDTFGIEEGLMTTVHATTATQK-----TVDGPSKKDWRG---GRGASANIIPSSTGA 213

Query: 398 LLKLSAKSFHKLNGKLTGMAFRVPVAXVSVVDLTVRLGXPASYEAIKQKVKEAA*GPLKG 577
             K   K    LNGKLTGMAFRVP   VSVVDLTV+L  P +YE IK  +K A+ GP+KG
Sbjct: 214 -AKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKG 272

Query: 578 ILGYT 592
           +LGYT
Sbjct: 273 VLGYT 277


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 86  VIISAPSGPDAPMFVVGVNLEAYDPSYKVISNASCTTNCLAP-LAKVIHDNFEIIEGLMT 262
           VI SA  GP  P  +VG+N    D   K + N     N L P L K    NF+++E  M 
Sbjct: 124 VINSAMFGPQNPRTIVGLNY-VIDTLKKHVFN-----NLLWPSLDKAGFINFQVVEPSMY 177

Query: 263 TVHATT 280
           T   TT
Sbjct: 178 TSLTTT 183


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 317 GKTGXGGPAMAVGLRNQQNIIPASTGALLKLSAKSFHKLNGKLTGMAFRVPVAXVSVVDL 496
           G+ G G     VGLR Q  IIP  + ++     +   KL  K       V ++   +++ 
Sbjct: 107 GQKGTGKTYSVVGLRGQPGIIPHISESIF----EEIDKLKKKSPNTTITVSISLAEIIEE 162

Query: 497 T 499
           T
Sbjct: 163 T 163


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 274 HYCHPERMVELDPSGKNWXWGARD 345
           H CHP+   EL P+  +  W + D
Sbjct: 413 HSCHPQSSPELPPTHDHPMWNSWD 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,952
Number of Sequences: 5004
Number of extensions: 48223
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)