Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A24
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 199 2e-51
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 30 1.2
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4) 29 3.7
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) 29 3.7
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20012| Best HMM Match : Retrotrans_gag (HMM E-Value=0.005) 28 4.9
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 28 6.5
SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 199 bits (485), Expect = 2e-51
Identities = 116/186 (62%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
Frame = +2
Query: 38 TTTDKASAHLVGGAKKVIISAPSGPDAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLA 217
TT +KA HL GGAKKVIISAPS DAPMFV+GVN E YDPS V+SNASCTTNCLAPL
Sbjct: 876 TTLEKAGFHLKGGAKKVIISAPSA-DAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLV 934
Query: 218 KVIHDNFEIIEGLMTTVHATTATQKEWLNWTLLGKTGXGGPAMAVGLRNQQNIIPASTGA 397
KVI+DNF + EGLMTT+HA TATQK T+ G + G QN+IPASTGA
Sbjct: 935 KVINDNFGLEEGLMTTIHAYTATQK-----TVDGPSAKN---WRDGRGAHQNVIPASTGA 986
Query: 398 LLKLSAKSFHKLNGKLTGMAFRVPVAXVSVVDLTVRLGXPASYEAIKQKVKEAA*GPLKG 577
K K ++NGKLTGMAFRVPVA VSVVDLT RL PA YE IK VK+A+ G
Sbjct: 987 -AKAVGKVIPEVNGKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASESKEMG 1045
Query: 578 -ILGYT 592
LGYT
Sbjct: 1046 QYLGYT 1051
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 149 AYDPSYKVISNASCTTNCLAPLAKVIH--DNFEIIEGLMTTVHATTATQKEWLNWTLLGK 322
+Y+ +KV+ + T ++P A H +F + G + + T K L+G
Sbjct: 1051 SYNSYFKVLK-VTVTICIISPFAITSHLCRHFRAVAGHVLENYVTAVKNKSAEEMFLVGH 1109
Query: 323 TGXGGPAMAVGLRNQQNIIPAST 391
+ GG A VG+RN+ I S+
Sbjct: 1110 SLGGGLAKLVGIRNRIQAISVSS 1132
>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
Length = 303
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 313 SGKNWXWGARDGRGAQKSAKHYSCFHWRAAKAVGKVIP 426
+GK W W R G + K W A + V +VIP
Sbjct: 231 NGKRWRWVCRRRNGKCWAYKKQRRMGWGARRGVARVIP 268
>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
Length = 1060
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 47 DKASAHLVGGAKKVIISAP-SGPDAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 223
D+ S H V A V P S + +FV + YDP+ + ++ S + LAP + V
Sbjct: 20 DRISKHGVQSAPAVFGQRPVSNANGTLFVRRFQMFRYDPNIAITTHGSSKKSGLAPASSV 79
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 137 VNLEAYD---PSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATTATQKEWLNW 307
+N+ AY P ++ + C +P+ KV+ E L T +++TA QKEWL+W
Sbjct: 264 INIVAYAWRIPEFRQVLFRHCCCERASPMDKVLRP-----ERLETDPNSSTA-QKEWLHW 317
>SB_20012| Best HMM Match : Retrotrans_gag (HMM E-Value=0.005)
Length = 202
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 170 VISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATTATQKEWLNW 307
V S +AP+ +V D E L T +++TA QKEWL+W
Sbjct: 1 VRSTVQVPLTLMAPVEEVPMDKVLRPERLETDPNSSTA-QKEWLHW 45
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 150 ASRLTPTTNMGASGPLG-AEMITFLAPP 70
A+ TP NMG +GP G A TF+ PP
Sbjct: 98 ATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Frame = -3
Query: 337 PPXPSFSQKGPIQPFFLGGSSGMHCSHQTFNNFKVVVDD--LCEGCE-AVSCAGSI*NNF 167
PP + + P+ + +GG + + C T + V+ D+ E + A + G+ N
Sbjct: 261 PPYMTTQRAQPLSIYVIGGRNALDCQLATLERYDVLADEWVSMENMKHARTAVGACSLNG 320
Query: 166 VGRIVGFQVDTNYKHGS---IRXTWCGD----DYFLGSTHQVSRSFIS 44
+ +VG + N H +R C D + L + + RSF+S
Sbjct: 321 LLYVVGGECAVNSPHDDTMYVRYMECYDPIVRQWILLADIAIQRSFVS 368
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,621,453
Number of Sequences: 59808
Number of extensions: 378838
Number of successful extensions: 895
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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