Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A23
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   1.5  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.6  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   5.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   5.9  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   7.8  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 159 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLYFVGVKINDVVVEKLVTFFD 308
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 233 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 96
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 57  YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 161
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 440 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 297
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 353  FFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEIKFLLRIRLQV 219
            F G+ + +S +   I+ EC   L  N+ D   +EI+ L R+ + V
Sbjct: 1153 FIGELFKLSMLSEKIMHECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 166  HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 300
            +S S I   W T  HSS+  +L   R +  S +  ++  LRN  H
Sbjct: 973  NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 91  HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 207
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,361
Number of Sequences: 5004
Number of extensions: 48605
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)