Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A23
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0511 + 3969874-3970269                                           28   6.0  
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711...    27   8.0  

>11_01_0511 + 3969874-3970269
          Length = 131

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 485 VPKKILITASVAKIGLNVDGNTERLVVESWL 393
           VP+  L+   V  +G + DG TE   VE WL
Sbjct: 96  VPRCSLVLGGVRLVGRDGDGLTEEREVEQWL 126


>03_02_0289 -
           7115045-7115867,7116373-7116929,7117327-7117544,
           7117829-7117928,7118665-7118832
          Length = 621

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 234 PQEKLYFVG---VKINDVVVEKLVTFFDYSQFDATNSVFLTKK 353
           PQ  +YFVG   + +    ++  V+ F   QFD T+ V  TKK
Sbjct: 192 PQYLIYFVGLYMIALGSGGIKPCVSSFGADQFDDTDPVERTKK 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,602
Number of Sequences: 37544
Number of extensions: 292658
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)