Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A23
         (570 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538345-1|CAD98108.1| 1582|Homo sapiens hypothetical protein pr...    32   1.6  
BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein pr...    30   5.0  
BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription ...    30   5.0  
BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.        30   5.0  
AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.     30   5.0  
BC059402-1|AAH59402.1|  842|Homo sapiens round spermatid basic p...    29   8.7  

>BX538345-1|CAD98108.1| 1582|Homo sapiens hypothetical protein
            protein.
          Length = 1582

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 75   HVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLK-PYPQEKLY 251
            H+   APK FD+ T +   +D    +  D   YQ Y RI+  I A     +   P E L+
Sbjct: 1337 HLYAWAPKSFDESTAIKVCIDQSADSEGDYMSYQAYIRILAKIQAADPVNRFKRPDELLH 1396

Query: 252  FVGVKINDVVVEKLVT 299
             + +K+   +  K VT
Sbjct: 1397 LLKLKVFPTLDHKPVT 1412


>BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein
            protein.
          Length = 2150

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63   IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 233
            +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 928  LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 986


>BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription
            complex, subunit 1 protein.
          Length = 1551

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63   IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 233
            +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 933  LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 991


>BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.
          Length = 1620

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 233
           +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 177 LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 235


>AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.
          Length = 1835

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  IVARHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPY 233
           +  R+VL A  KPF    + F  +ALD ++  L+D   Y  +   + +   F H+L+ Y
Sbjct: 392 LALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 450


>BC059402-1|AAH59402.1|  842|Homo sapiens round spermatid basic
           protein 1-like protein.
          Length = 842

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 291 LVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPR 401
           L  F DY  F+  NS  L KK+I+T+   NF  +  R
Sbjct: 411 LPDFLDYFSFNFPNSPVLGKKDIETTTMSNFHAQVKR 447


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,807,441
Number of Sequences: 237096
Number of extensions: 1719048
Number of successful extensions: 6792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6792
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)