Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A23
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    29   2.2  
At1g30760.1 68414.m03761 FAD-binding domain-containing protein s...    29   2.2  
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    29   2.9  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   6.7  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    27   6.7  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    27   8.8  

>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
 Frame = +3

Query: 18  LYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALRDPAFYQ 176
           L+ EE  + Y+   Y+I A  +    GA+ K  D     T+    L   +   + PA  Q
Sbjct: 145 LFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQLPALQQ 204

Query: 177 LYNRIVGYI---NAFKHYLKPYPQ----EKLYFVGVKINDVVVEKLVTFFDYSQFDATNS 335
           L  R++G     +A+ +YL  Y      ++ + +   IND ++  +  FF+ S+ DA  +
Sbjct: 205 LLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVKA 264

Query: 336 VFLTKK 353
           + + K+
Sbjct: 265 LNIYKR 270


>At1g30760.1 68414.m03761 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 534

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 549 VRRIYASFLPIVMGNPXSLYLSPQEDLDNGISGKNRTXRRW 427
           +R +Y+     V  +P S Y++   DLD G++GK    R W
Sbjct: 459 MREMYSYMEQYVSKSPRSAYVN-YRDLDLGMNGKGSDAREW 498


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
 Frame = +3

Query: 18  LYEEEVTKDYQ-RSYEIVARHVLGAAPKPFDKH-TFMPSALDFYQTALRDPAFYQLYNRI 191
           L+ EE  + Y+   Y+I A  +  A+      H T M S  D  +     PA  QL  R+
Sbjct: 145 LFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQL---PALQQLLYRL 201

Query: 192 VG-------YINAFKHYLKPYPQEKLYFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTK 350
           +G       Y N    Y      ++ + +   IND ++  +  FF+ S+ DA  ++ + K
Sbjct: 202 IGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVKALNIYK 261

Query: 351 K 353
           +
Sbjct: 262 R 262


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 404 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 264
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 126 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLYFVGVKINDVVVEKLVTFF 305
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 306 DYSQFDATNSVFLTK 350
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 126 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLYFVGVKINDVVV 284
           S L     AL  P F+ + N  +  + A   YLKP+  + L     +  DV++
Sbjct: 220 SLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLL 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,052
Number of Sequences: 28952
Number of extensions: 248142
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)