Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A22
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.10
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 30 0.24
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 29 0.32
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 28 0.73
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 0.96
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 1.3
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 27 1.7
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 1.7
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 27 2.2
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 26 3.9
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 3.9
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 5.1
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 5.1
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 6.8
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 25 6.8
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 6.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.8
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.0
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 31.1 bits (67), Expect = 0.10
Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Frame = +2
Query: 74 VSSPSIVKTHNKGIAHQKLVQEHYQQFKDAETILAEEKDKKPCSRFGQG-SCQFGGICRY 250
++ S+ K +N+ + K +E+ + K + + +KD+K S +G + GI R
Sbjct: 41 IADTSVRKQYNEELVFTKDAKENAEAKKVSSKV---KKDRKNHSAAMEGVNINVPGIYRD 97
Query: 251 SHYTREQLDELKEYVTTKNIIKQDFVQPSFQVLYQRLESEKTQESHVSDENQYWLDDNGI 430
+ + E+ E +NI K++ + + VL ++L E + ++ N+Y +D+NG+
Sbjct: 98 VYPLPNEDVEMHEAKKKENICKKENLSKT--VLVRQLA-----EIYFANSNKYVVDENGL 150
Query: 431 SHILPWTYKS 460
++ +K+
Sbjct: 151 DDLIQQAFKN 160
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.9 bits (64), Expect = 0.24
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 41 RYYCEYCDNMMVSSPSIVKTHNKGIAHQKLVQE 139
+YYC+YC + +P ++H + HQ +++
Sbjct: 10 KYYCKYCQIFVKDTPFARRSHEQTYKHQDAIKK 42
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = +2
Query: 140 HYQQFKDAETILAEEKDKK----PCSRFGQGSCQFGGICRYSH 256
H +F T L K PC F QG+C G C +SH
Sbjct: 17 HLSEFNSEATSLTRPSPKSLQHVPCKFFRQGTCTSGKNCIFSH 59
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 188 DKKPCSRFGQGSCQFGGICRYSH 256
+K C F +G+C+FG C H
Sbjct: 66 EKTICKYFQKGNCKFGSKCALEH 88
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 53 EYCDNMMVSSPSIVKT---HNKGIAHQKLVQ-EHYQQFKDAET 169
EYC+NM++ + +T H G +H V +H Q AET
Sbjct: 731 EYCENMLLDDYDVYRTKLLHKAGYSHTLAVPGKHKQNISMAET 773
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.9 bits (59), Expect = 0.96
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 284 KEYVTTKNIIKQDFVQPSFQVLYQRLESEKTQESHVSDENQYWLDDNGISHILPWTYKSV 463
K + +N+ D SF L+Q K + SH +Q+W ++ + +L KS
Sbjct: 244 KSEASRRNLTSSDETN-SFSKLHQSQFGLKEESSHEPRSSQHWKNEVAMKDLLKNLIKSK 302
Query: 464 FES 472
ES
Sbjct: 303 LES 305
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 153 LKMQKLYWPKRKIKSHAVDLVKVLASLVVYAGIHITLEN 269
++M+ W +R H ++L K LV+ A + T+EN
Sbjct: 35 VRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIEN 73
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 105 IKGLLIKS*YKNIISSLKMQKLYWPKRKIKSHAVDLVKVLASLVV 239
IK LL+ + + I + QK+ W IKSH +L+++L L V
Sbjct: 268 IKELLMNAKFYFISALGVYQKIGWDDEGIKSHIQELLEILNGLGV 312
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 182 EKDKKPCSRFGQGSCQFGGICRYSH 256
E ++ C F +G+C+FG C SH
Sbjct: 68 ETERPICKYFLKGNCKFGPKCALSH 92
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSH 256
PC F G+C G C +SH
Sbjct: 46 PCKFFRNGTCTAGENCPFSH 65
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 233 GGICRYSHYTREQLDELKEYVTTKNIIKQDFV 328
GG C + R+ D+L +YV K +D V
Sbjct: 72 GGTCECTEANRDDCDKLDDYVLCKEDFHRDLV 103
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 153 LKMQKLYWPKRKIKSHAVDLVKVLASLVVYAGIHITLEN 269
++M W +R H ++L K LV+ A + T+EN
Sbjct: 34 VRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIEN 72
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 266 EQLDELKEYVTTKNIIKQDFVQPSFQVLYQRLESEKTQES 385
E L E+K + NI D SF + E+ KTQ+S
Sbjct: 35 ETLSEMKRHPLYSNIFNADNNTTSFTEQIETSETSKTQDS 74
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 137 EHYQQFKDAETILAEEKDKKPCSRFGQGSCQFGG 238
+ +++ A ILA+E+ + RFG+ Q GG
Sbjct: 43 DKFKEISRAYEILADEEKRATYDRFGEEGLQGGG 76
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/26 (30%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 194 KPCSRFG-QGSCQFGGICRYSHYTRE 268
+PC + G+C++G C+++H +E
Sbjct: 330 EPCKNWQISGTCRYGSKCQFAHGNQE 355
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 323 FVQPSFQVLYQRLESEKTQESHVSD--ENQYWLDDNGISHILPWTYKSVFESYGENLTRS 496
FV ++++ Q+ + + ES ++ + W+ DN I+ +L T+ +GE +T
Sbjct: 524 FVVSFYKMILQKKVTLQDMESMDAEYYRSLVWILDNDITGVLDLTFSVEDNCFGEVVTID 583
Query: 497 IK 502
+K
Sbjct: 584 LK 585
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 275 DELKEYVTTKNIIKQDFVQPSFQVLYQRLESEKTQESHVSDENQYWLDDN 424
DE+ +Y+T ++ + + ++ + + E + S N+Y DDN
Sbjct: 59 DEISQYITPEDSVLLEKLENIYVERFNEKEPRDVRISLTFQPNEYLQDDN 108
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 200 CSRFGQGSCQFGGICRYSHYTREQLDELKEYV 295
C + CQ GG+C + H + L++ V
Sbjct: 149 CRQHETSECQRGGLCNFMHAKKPSPQLLRDLV 180
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Frame = +2
Query: 230 FGGICRYS--HYTREQLDELKEYVT--TKNIIKQDFVQ-PSFQVLYQRLESEKTQES--H 388
FG IC+ S ++ +++ + T+ + Q+F+ P+ + L + + +
Sbjct: 681 FGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLN 740
Query: 389 VSDENQYWLDDNGISHILP 445
V+DE+Q +L ISH++P
Sbjct: 741 VADESQKFLILRSISHVIP 759
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 44 YYCEYCDNMMVSSPSIVKTHNKGIAHQ 124
YYCE C + S + + NK HQ
Sbjct: 61 YYCEVCHSRSDVSSQVQNSPNKDEEHQ 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,583
Number of Sequences: 5004
Number of extensions: 49282
Number of successful extensions: 159
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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