Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A22
(519 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 54 8e-08
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 31 0.35
At2g17080.1 68415.m01972 hypothetical protein contains Pfam prof... 31 0.35
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 31 0.47
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 31 0.47
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 31 0.61
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 31 0.61
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 31 0.61
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 30 0.81
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 30 1.1
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 30 1.1
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 1.4
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 29 1.4
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 29 1.4
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 29 1.4
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 29 1.4
At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra... 29 1.4
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 29 1.4
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 29 2.5
At2g42400.1 68415.m05248 expressed protein 29 2.5
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 28 3.3
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 28 3.3
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 28 3.3
At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondri... 28 4.3
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 28 4.3
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 28 4.3
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 28 4.3
At5g16280.1 68418.m01901 expressed protein 28 4.3
At4g07800.1 68417.m01233 hypothetical protein 28 4.3
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 4.3
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 28 4.3
At1g54115.1 68414.m06169 cation exchanger, putative 28 4.3
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 27 5.7
At3g18640.1 68416.m02368 zinc finger protein-related contains si... 27 5.7
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 27 5.7
At1g17820.1 68414.m02206 expressed protein 27 5.7
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 27 7.6
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 27 7.6
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 27 7.6
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 27 7.6
At1g67410.1 68414.m07672 exostosin family protein contains Pfam ... 27 7.6
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 27 7.6
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 53.6 bits (123), Expect = 8e-08
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 41 RYYCEYCDNMMV-SSPSIVKTHNKGIAHQKLVQEHYQQFKDAET-ILAEEKDKKPCSRFG 214
RYYC+YCD + SPS+ K HN G H+ V+ +YQQF++ +T L +++ K+ + G
Sbjct: 3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQTG 62
Query: 215 QGSCQFGGI 241
G Q G +
Sbjct: 63 -GYQQVGAV 70
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 31.5 bits (68), Expect = 0.35
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 92 VKTHNKGIAHQKLVQEHYQQFKDAETILAEEKDKKPCSRFGQ-GSCQFGGICRYSHYTRE 268
V+T ++ + +E K + D + CS + + GSC++G C+++H R
Sbjct: 71 VETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRR 130
Query: 269 QLDELKEYVTTKN 307
+L +E V ++
Sbjct: 131 KLQIGRERVRERD 143
>At2g17080.1 68415.m01972 hypothetical protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 263
Score = 31.5 bits (68), Expect = 0.35
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +2
Query: 50 CEYCDNMMVSSPSIVKTHNKGIAHQKLVQEH----YQQFKDAETILAE--EKDKKPCSRF 211
C+ DN+ S+ K ++ + Q L QEH +Q D + + K S
Sbjct: 45 CQRLDNLQELHESLDKLISRPVTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEM 104
Query: 212 GQGSCQFGGICRYSHYTREQLDELKEYVTTKNIIKQDF--VQPSFQV 346
+G + I R + +E+K+Y+T++ +K+ F VQ S +V
Sbjct: 105 KEGLMEIQSILRRKR--GDLSEEVKKYLTSRKSLKKSFQKVQKSLKV 149
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 31.1 bits (67), Expect = 0.47
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 194 KPCSRFGQGSCQFGGICRYSH 256
K C RF +G+C FG C ++H
Sbjct: 217 KICERFSKGNCTFGDRCHFAH 237
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 194 KPCSRFGQGS-CQFGGICRYSHY 259
KPC++F S C FG C + HY
Sbjct: 40 KPCTKFFSTSGCPFGENCHFLHY 62
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 200 CSRFGQGSCQFGGICRYSHYTREQLDELKEYVTTK 304
C F Q C+FG CR SH + LK Y T+
Sbjct: 142 CKFFMQQRCRFGSSCRSSHGLDVPISSLKNYEQTE 176
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 30.7 bits (66), Expect = 0.61
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSH 256
PC F +GSC+ G +C Y+H
Sbjct: 302 PCPDFKKGSCKQGDMCEYAH 321
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 173 LAEEKDKKPCSRF-GQGSCQFGGICRYSH 256
L+E D+ C F G+C++G C+YSH
Sbjct: 258 LSESSDQPECRFFMNTGTCKYGDDCKYSH 286
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 173 LAEEKDKKPCSRF-GQGSCQFGGICRYSH 256
L+E D+ C F G+C++G C+YSH
Sbjct: 258 LSESSDQPECRFFMNTGTCKYGDDCKYSH 286
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 30.3 bits (65), Expect = 0.81
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSH 256
PC F +GSC G C Y+H
Sbjct: 254 PCPEFRKGSCSRGDTCEYAH 273
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 191 KKPCSRFGQ-GSCQFGGICRYSH 256
+K CS F + G C+FG CRY H
Sbjct: 139 EKECSYFMRTGQCKFGSTCRYHH 161
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 197 PCSRFGQ-GSCQFGGICRYSH 256
PC+ F Q G C+FG C++ H
Sbjct: 341 PCTHFAQHGICKFGPACKFDH 361
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSHYTREQLDELKEYVT 298
PC F +GSC G C Y+H E +Y T
Sbjct: 256 PCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKT 289
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSH 256
PCS F +G C+ G CR+ H
Sbjct: 153 PCSYFARGFCKNGASCRFVH 172
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 209 FGQGSCQFGGICRYSH-YTREQLDEL 283
FG G+C FG C Y H Y+ L+E+
Sbjct: 268 FGNGNCPFGASCFYKHAYSDGHLEEV 293
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 209 FGQGSCQFGGICRYSH-YTREQLDEL 283
FG G+C FG C Y H Y+ L+E+
Sbjct: 268 FGNGNCPFGASCFYKHAYSDGHLEEV 293
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSH 256
PC F +G+C+ G +C Y+H
Sbjct: 306 PCPDFRKGACRRGDMCEYAH 325
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 197 PCSRFGQGSCQFGGICRYSH 256
PC F +GSC G C Y+H
Sbjct: 259 PCPEFRKGSCPKGDSCEYAH 278
>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
transferase 2 (IPT2) identical to tRNA
isopentenyltransferase (IPT2) [Arabidopsis thaliana]
GI:14279058; identical to cDNA tRNA isopentenyl
transferase GI:12383201;
Length = 466
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 20 LECNMGKRYYCEYCDNMMVSSPSIVKTHNKGIAHQKLVQEH--YQQFKDAETILAE 181
+E ++ +Y CE C N ++ + H +G H+K H Q +K+ E AE
Sbjct: 409 IERDLWTQYVCEACGNKILRGRHEWEHHKQGRTHRKRTTRHKNSQTYKNREVQEAE 464
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 191 KKPCSRFGQGSCQFGGICRYSH 256
K+ C F +GSC++G CR+ H
Sbjct: 3 KELCRNFQRGSCRYGENCRFLH 24
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 28.7 bits (61), Expect = 2.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 194 KPCSRFGQGSCQFGGICRYSH 256
K C R+ +G+C +G C ++H
Sbjct: 209 KICDRYSKGNCTYGDRCHFAH 229
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 194 KPCSRFGQGS-CQFGGICRYSHY 259
KPC++F S C FG C + HY
Sbjct: 40 KPCTKFFSTSGCPFGDNCHFLHY 62
>At2g42400.1 68415.m05248 expressed protein
Length = 450
Score = 28.7 bits (61), Expect = 2.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 2 CSIWICLECNMGKRYYCEYCDN 67
C++W C G +Y +YC N
Sbjct: 230 CALWDCTRPAQGSEWYLDYCSN 251
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 185 KDKKPCSRFGQGSCQFGGICRYSH 256
K +K C+ + G+C +G CRY H
Sbjct: 110 KTEKVCNFWVDGNCTYGDKCRYLH 133
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 179 EEKDKKPCSRFGQ-GSCQFGGICRYSH 256
+ D+ C F + G C+FG CRY H
Sbjct: 281 QRPDQPECQYFMRTGDCKFGSSCRYHH 307
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 191 KKPCSRFGQ-GSCQFGGICRYSHYTREQLDELKEYVTTKNIIKQDFVQPSFQVLYQRLES 367
+K CS + + G C+FG CR++H + + +Q QP Q +Y L+S
Sbjct: 126 EKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQ----QQPQPQPQLQTIYPTLQS 181
Query: 368 EKTQES 385
+ S
Sbjct: 182 QSIPSS 187
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 191 KKPCSRF-GQGSCQFGGICRYSHYTREQLDELKEYVTTKNIIKQDFVQPSFQVLYQRLES 367
KK C + G C++ CR++H T ++ EL + K+I+ ++ +P +Q ++ ES
Sbjct: 58 KKDCQFYLKNGLCRYRSSCRFNHPT-QRPQELPVRI-CKHIMDRNVAEPMYQD-WRESES 114
Query: 368 EK 373
E+
Sbjct: 115 ER 116
>At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondrial,
putative similar to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 776
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = +2
Query: 71 MVSSPSIVKTHNKGIAH--QKLVQEHYQQFK----DAETILAEEKDKK 196
+ PS++ K A +LV+EHY++FK +A+T+L E K+ K
Sbjct: 389 LCGDPSVLDIVRKMCADTGDELVEEHYERFKPLVVEAKTLLGELKNVK 436
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 200 CSRFGQ-GSCQFGGICRYSH 256
CS F + G C+FGG C+++H
Sbjct: 118 CSYFLRIGQCKFGGTCKFNH 137
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 200 CSRFGQ-GSCQFGGICRYSH 256
CS F + G C+FGG C+++H
Sbjct: 139 CSYFLRIGQCKFGGTCKFNH 158
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 200 CSRFGQ-GSCQFGGICRYSH 256
CS F + G C+FGG C+++H
Sbjct: 139 CSYFLRIGQCKFGGTCKFNH 158
>At5g16280.1 68418.m01901 expressed protein
Length = 1265
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 224 CQFGGICRYSHYTREQLDELKEYVTTKNIIKQDFVQPSFQVLYQRLESEKTQ 379
C F I + +QL LK++ T + D QP+ +V QRLE TQ
Sbjct: 48 CNFSNIDVPVRTSSDQLYRLKKF-TLRLFYASDIKQPNVEVAKQRLERVITQ 98
>At4g07800.1 68417.m01233 hypothetical protein
Length = 448
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 41 RYYCEYCDNMMVSSPSIVKTHNKGIAHQKLVQEHYQQFK-DAETILAEEKDKKPCSRFGQ 217
+Y +C +P+I K +N G +K V +QQF DA TI+ E ++ +F Q
Sbjct: 17 QYPLMFCYGEDGYTPAIEKCYNSGSTKKKSVSRLFQQFLIDAYTII--ESNRLAYIKFNQ 74
Query: 218 GSCQ--FGGICRY 250
+ F RY
Sbjct: 75 SKLRSSFTSASRY 87
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 155 KDAETILAEEKDKKPCSRFGQGSCQFGGICRYSH 256
+D ET + + C F +G C G C++SH
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSH 154
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 218 GSCQFGGICRYSHYTR 265
GSC++G CRY+H R
Sbjct: 353 GSCKYGATCRYNHPER 368
>At1g54115.1 68414.m06169 cation exchanger, putative
Length = 644
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 514 YLKFFYTSC*VFTVALKYTLVSPW 443
YLKFFY SC F + L Y L+ W
Sbjct: 121 YLKFFYCSCRDFKI-LGYILLGVW 143
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 185 KDKKPCSRFGQGSCQFGGICRYSH 256
K +K C + G+C +G CRY H
Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126
>At3g18640.1 68416.m02368 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 676
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 197 PCSRF--GQGSCQFGGICRYSHYTREQ 271
PC F G G C+ G CR+SH+ ++
Sbjct: 219 PCKFFAAGTGFCRNGKYCRFSHHVADR 245
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 194 KPCSRFGQGSCQFGGICRYSH 256
K C F +G C+ G CRY H
Sbjct: 160 KICHYFNKGFCKHGNNCRYFH 180
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 245 RYSHYTREQLDELKEYVTTKNIIKQDFVQPSFQVLYQRLE 364
R+ Y+ + ++ + YVT+ N+ F++PS ++ L+
Sbjct: 200 RFIWYSTKLKEDFRNYVTSLNVAYPSFMKPSLGFSFETLD 239
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 194 KPCSRFGQGSCQFGGICRYSH 256
KPC F +G C+ G C++ H
Sbjct: 133 KPCVYFSRGLCKNGESCKFIH 153
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 158 DAETILAEEKDKKPCSRFGQ-GSCQFGGICRYSH 256
++E + + CS + + GSC+FG C+++H
Sbjct: 102 ESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNH 135
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 173 LAEEKDKKPCSRFGQ-GSCQFGGICRYSH 256
L + +KPC + Q G C+FG C++ H
Sbjct: 126 LPMRQGEKPCPYYMQTGLCRFGVACKFHH 154
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 200 CSRFGQGSCQFGGICRYSH 256
C F +GSC+ G C +SH
Sbjct: 136 CPEFRKGSCRRGDSCEFSH 154
>At1g67410.1 68414.m07672 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 430
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 395 DENQYWLDDNGISHILPWTYKSVFESYGENLTRSI 499
+ ++YW G H++P T+ + F + + SI
Sbjct: 166 ENSKYWNRSGGKDHVIPMTHPNAFRFLRQQVNASI 200
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 341 QVLYQRLESEKTQESHVSDENQYWLDDNGISHILPWTYKSVFESYGENLTRSIKKFK 511
Q + + + T+ES+ +D N + LDDN +P++ + S E S+K K
Sbjct: 1435 QEVISSMRALMTEESNDADSNSFLLDDNS---SIPFSIDEISNSMHEKDFASVKPAK 1488
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,831,346
Number of Sequences: 28952
Number of extensions: 248185
Number of successful extensions: 851
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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