Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A21
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   5.6  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.7  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 330 LLDYTKKNSKTKILNSCILK*SNYIQVNLPTELLSLSNSDSKI 458
           LLD    N+      +C+LK  NYI+ +L  E++ L+N    +
Sbjct: 103 LLDKPAANNTKADAEACLLKSKNYIKKSL-QEIVYLTNMQPNV 144


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 220 RMINNFKIVKQRNISDFIGS*RPLVMLFASHR*LLLY 330
           R + N+K  K  +IS+++ S +  VML   H  LLLY
Sbjct: 486 RYLKNYK--KNTSISEYLLSSQRDVMLAVEHSLLLLY 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,041
Number of Sequences: 5004
Number of extensions: 37522
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)