Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A18
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    29   0.30 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    26   2.8  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   4.9  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   4.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.6  

>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 248 NWDLNIYPTTRFASEYGVQSLPSLFTMRTAT---KDQKDFSIDSEYSKHRQHQPNGYDYL 418
           +WDL +Y    +  +  +  +P  FT+   +   + + DF+ ++  S+H +      DYL
Sbjct: 218 SWDLLVYKYMMYVYDKWIFHIPLYFTVDYVSERLRSEVDFTTEANNSEHAREGVEETDYL 277

Query: 419 ENQL 430
            +++
Sbjct: 278 RDKI 281


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +2

Query: 260 NIYPTTRFASEYGVQSLPSLFTMRTATKDQKDFSIDSEYSKHRQHQPNGYDYLENQLTKR 439
           N+    +   EY ++SL       T TK+  + ++ S  SKHR  +    D  +  ++K+
Sbjct: 243 NLQEIKKGTKEYSLKSLEM-----TTTKESNE-TLCSNDSKHRIARLKNEDNTQKPISKK 296

Query: 440 MKLEKNDTKY 469
            K +K   KY
Sbjct: 297 RKSKKASHKY 306


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +2

Query: 125 GRRY-LVSSPSNGKESETEGYIAVNPYDSHYGDTHYYNYFADNWDLNIYPTTRFASEYGV 301
           G+RY L+    +GK +  E   A +     + D++  N  A+  D+N       +++  V
Sbjct: 101 GQRYGLLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKV 160

Query: 302 QSLPSLFTMRTATKDQKDFSIDSEYSKHRQHQPNGYD 412
           Q L +     +   D  D  ++S+Y +     P+ ++
Sbjct: 161 QKLEAEIEELSTADDVDDVLLESKYEELDDMDPSTFE 197


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 167 SETEGYIAVNPYDSHYGDTHYYNYFADNWDLNIYPTTRFASEYG 298
           S+ +G+  V P D+ Y +     Y  +N D  + PT   + + G
Sbjct: 134 SQIQGFFNV-PVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDAG 176


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 407 YDYLENQLTKRMKLEKNDTKYFEKFVFYQ 493
           + Y E    K  K  KNDT+++ K V YQ
Sbjct: 18  FAYFEPLTIKGRKFFKNDTQFYIKGVAYQ 46


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 299  VQSLPSLFTMRTATKDQKDFSIDSEYSKHRQHQPNGYDYLENQL 430
            +Q++  +F+  T    +K     S + K+RQ+Q N  D+ EN L
Sbjct: 4254 LQTIDKIFSNLTKGSFEKLTFNFSNFVKYRQYQINLKDFRENLL 4297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,551
Number of Sequences: 5004
Number of extensions: 40743
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)