Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A18
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0983 + 7775045-7776328                                           29   2.1  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    29   2.8  
02_03_0127 + 15547048-15547302,15547511-15548459,15548562-155486...    27   8.7  

>01_01_0983 + 7775045-7776328
          Length = 427

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 104 IVESVDPGRRYL-VSSPSNGKESETEGYIAVNPYDSHYGDTHYYNYFADNWDLNIYPTT 277
           IV+ +D   R + VSSPS+G   E      VNP  + +    Y   FAD W    Y  T
Sbjct: 261 IVQLIDGKFRCVEVSSPSHGAAPEVSMRTLVNPETAEWA-PEYTVSFADIWASESYKAT 318


>10_06_0143 - 11183574-11183761,11183989-11184344,11184437-11184592,
            11184825-11184994,11185906-11186064,11186856-11187164,
            11187281-11187576,11187825-11188174,11188279-11188434,
            11188634-11188803,11189289-11189447,11190702-11191010,
            11191172-11191458,11191911-11192263,11192366-11192521,
            11192680-11192849,11195800-11195958,11196937-11197254,
            11197658-11197786
          Length = 1449

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 65   LEYVKLYVDTIKPIVESVDPGRRYLVSSPSNGKESETEGYIAVNPYDSHYGDTHYYNYFA 244
            LE +K Y +    +V      + Y++ S     ES TE     + +     D HYYN F 
Sbjct: 1292 LEKLKKYYEDAYNVVRKYT-AKAYVIMSNRLAGESNTELLDFASRFPGVVIDVHYYNLFN 1350

Query: 245  DNWDLNI 265
            D+   N+
Sbjct: 1351 DDTFKNL 1357


>02_03_0127 +
           15547048-15547302,15547511-15548459,15548562-15548677,
           15548784-15548890,15550639-15550873,15550957-15551011,
           15551802-15551893
          Length = 602

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 81  SLTYSNWYATKSEFDKYK 28
           SL YSNW+  + +F K+K
Sbjct: 518 SLDYSNWWTQRKKFKKFK 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,037
Number of Sequences: 37544
Number of extensions: 211085
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)