Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A18
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                67   9e-12
SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                30   0.95 
SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)             29   2.9  
SB_7609| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)                     27   8.9  
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)                      27   8.9  
SB_58317| Best HMM Match : rve (HMM E-Value=0.00053)                   27   8.9  

>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 33/86 (38%), Positives = 52/86 (60%)
 Frame = +2

Query: 224 HYYNYFADNWDLNIYPTTRFASEYGVQSLPSLFTMRTATKDQKDFSIDSEYSKHRQHQPN 403
           H+YNY  D  +++ YP  RFASEYGVQS  S  T+   + ++ D+  +S +  HRQH  N
Sbjct: 376 HFYNYTMDCLNVSGYPKPRFASEYGVQSYASFETLAPISIEE-DWHYNSSFMDHRQHHAN 434

Query: 404 GYDYLENQLTKRMKLEKNDTKYFEKF 481
           G + + NQ+ K  K+  ++ K  ++F
Sbjct: 435 GNEEMLNQIKKHFKIPSSE-KSLKRF 459


>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 425 QLTKRMKLEKNDTKYFEKFVFYQSDLT 505
           Q+ KR K++ N+ ++F  + FY  D+T
Sbjct: 512 QMLKRFKIDLNEEEFFHVYSFYDKDMT 538


>SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 894

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -2

Query: 422 FQDNRIHLVDVACASN----IRCQY*NPSDLL*QSSL*ITTVKTEHRIQMQILSSDKYLD 255
           F+ + +H  +++ A N    +R    +PS     S    T +     +  Q + S   LD
Sbjct: 448 FELSGMHNTEISIAHNLSYQVRVTQRSPSPYFDLSGTHNTEIFIVQALSYQ-MESKHDLD 506

Query: 254 PNCRQNSCSNVYRHNAN 204
           P   +NSC +V+R +AN
Sbjct: 507 PQVSENSCDSVHRKDAN 523


>SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)
          Length = 786

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 179 GYIAVNPYD-SH-YGDTHYYNYFADNWDLNIYPTTRFASEYGVQSLPSLFTMRTATKDQK 352
           G+  VN Y  +H YGD + YN   D  D+N Y  T     YG   + S +T      D  
Sbjct: 273 GHADVNSYTITHGYGDINNYNVTYDQADINSYTIT-----YGHTDVDS-YTFSYDQTDIC 326

Query: 353 DFSIDSEYSKHRQHQ-PNGY 409
            +S+ ++Y   R +   NG+
Sbjct: 327 CYSVTNDYPDIRSYNITNGH 346


>SB_7609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 179 GYIAVNPYD-SH-YGDTHYYNYFADNWDLNIYPTTRFASEYGVQSLPSLFTMRTATKDQK 352
           G+  VN Y  +H YGD + YN   D  D+N Y  T     YG   + S +T      D  
Sbjct: 158 GHADVNSYTITHGYGDINNYNVTYDQADINSYTIT-----YGHTDVDS-YTFSYDQTDIC 211

Query: 353 DFSIDSEYSKHRQHQ-PNGY 409
            +S+ ++Y   R +   NG+
Sbjct: 212 CYSVTNDYPDIRSYNITNGH 231



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 173 TEGYIAVNPYD-SH-YGDTHYYNYFADNWDLNIYPTT 277
           T+G+  VN Y  +H YGD + Y    D  D+N Y  T
Sbjct: 36  TKGHADVNSYTITHGYGDINSYTVTYDQADINSYTIT 72


>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
          Length = 264

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 416 LENQLTKRMKLEKN--DTKYFEKFVFYQSD 499
           LENQLT+  K EK+  D    +K  F+Q D
Sbjct: 16  LENQLTEAQKKEKDAEDKSKLQKHTFFQLD 45


>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
          Length = 465

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 416 LENQLTKRMKLEKN--DTKYFEKFVFYQSD 499
           LENQLT+  K EK+  D    +K  F+Q D
Sbjct: 217 LENQLTEAQKKEKDAEDKSKLQKHTFFQLD 246


>SB_58317| Best HMM Match : rve (HMM E-Value=0.00053)
          Length = 1002

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 77  KLYVDTIKPIVESVDPGRRYLVSSPSNGKESETEGYIAVNPYDSHYGDTHY 229
           K++   ++P     +  RR++  SP  G  S  +   AV+P +S YGD  +
Sbjct: 143 KVFSQGLRPTDFWREAKRRFVRPSPGGGGHSGAQAAPAVSP-ESFYGDNKF 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,144
Number of Sequences: 59808
Number of extensions: 272338
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)