Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_A18
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical pr... 110 5e-25
U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical pr... 31 0.63
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 29 1.5
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 29 1.5
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 29 1.9
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 29 1.9
AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical... 29 1.9
AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical ... 28 3.4
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 27 5.9
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 27 5.9
AF045645-2|AAC02609.1| 299|Caenorhabditis elegans Hypothetical ... 27 5.9
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 27 5.9
AF022971-2|AAG23980.1| 327|Caenorhabditis elegans Seven tm rece... 27 7.8
>Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical
protein C33G3.4 protein.
Length = 900
Score = 110 bits (265), Expect = 5e-25
Identities = 61/136 (44%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Frame = +2
Query: 2 ENEAALRGNLYLSNSDFVAYQL-EYVKLYVDTIKPIVESVDPGRRYLVSSPSNGKESETE 178
ENEAA+RG+ + +++ + Q+ +YV LY K I + V P +++SSPSNG E+E E
Sbjct: 463 ENEAAIRGHWWKASNYTESQQVKDYVLLYQRLAK-IAKKVAPTIPFIMSSPSNGVETEEE 521
Query: 179 GYIAVNPYDSHYGDTHYYNYFADNWDLNIYPTTRFASEYGVQSLPSLFTMRTATKDQKDF 358
G ++ NPYD YGD HYYN F + W + Y T R ASEYGVQS P TM ++ D+
Sbjct: 522 GGVSKNPYDVRYGDIHYYNEFVNLWRDDTYLTPRCASEYGVQSYPMKETMLNWI-NESDW 580
Query: 359 SIDSEYSKHRQHQPNG 406
S+ HRQH P G
Sbjct: 581 EYTSKAMFHRQHHPGG 596
>U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical
protein K11G9.2 protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.63
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +2
Query: 215 GDTHYYNYFADNWDLNI--YPTTRFAS--EYGVQSLPSLFTMRTATKDQKDFSIDSEYSK 382
G+ Y + A+ DL + Y TT F + +YG ++P + T T+ + F IDS S+
Sbjct: 439 GEGVYSKFDANEKDLKMMEYMTTMFTNFAKYGNPNIPGVTNWETYTEGSRHFHIDSTDSE 498
Query: 383 HR-QHQPNGYDYLENQLTKRMK 445
+ Q N +L+ Q+ ++ K
Sbjct: 499 MKDSFQENRCQFLK-QIQEQSK 519
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 134 YLVSSPSNGKESETEGYIAVNPYDSHYGD-THYYNYFADNWDLNIYPTT 277
Y S+P NG S T Y N Y + YY D+ LNI PTT
Sbjct: 24 YDYSTPFNGTYSFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISPTT 72
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 134 YLVSSPSNGKESETEGYIAVNPYDSHYGD-THYYNYFADNWDLNIYPTT 277
Y S+P NG S T Y N Y + YY D+ LNI PTT
Sbjct: 24 YDYSTPFNGTYSFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISPTT 72
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/90 (23%), Positives = 39/90 (43%)
Frame = +2
Query: 203 DSHYGDTHYYNYFADNWDLNIYPTTRFASEYGVQSLPSLFTMRTATKDQKDFSIDSEYSK 382
++HY D H+ NYF T R +SL + T+R A +D + +
Sbjct: 544 EAHYDDPHWVNYFLH------CGTLRIQGMKMSKSLKNFITIRKALEDYTPRQLRLLFLM 597
Query: 383 HRQHQPNGYDYLENQLTKRMKLEKNDTKYF 472
H + + DY + + + ++ EK ++F
Sbjct: 598 H--NWADVLDYSSSTMERALQFEKITNEFF 625
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/90 (23%), Positives = 39/90 (43%)
Frame = +2
Query: 203 DSHYGDTHYYNYFADNWDLNIYPTTRFASEYGVQSLPSLFTMRTATKDQKDFSIDSEYSK 382
++HY D H+ NYF T R +SL + T+R A +D + +
Sbjct: 543 EAHYDDPHWVNYFLH------CGTLRIQGMKMSKSLKNFITIRKALEDYTPRQLRLLFLM 596
Query: 383 HRQHQPNGYDYLENQLTKRMKLEKNDTKYF 472
H + + DY + + + ++ EK ++F
Sbjct: 597 H--NWADVLDYSSSTMERALQFEKITNEFF 624
>AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical
protein T22D1.1 protein.
Length = 536
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 362 IDSEYSKHRQHQPNGYDYLENQLTKRMKLEKNDTKYFE 475
I+S + R+++ GY L+ L RMK EK +T YFE
Sbjct: 202 IESYFELMREYERQGYLTLDYWL--RMKFEKIETPYFE 237
>AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical
protein B0212.3 protein.
Length = 672
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 167 SETEGYIAVNPYDSHYGDTHYYNYFADNWDLNIYP 271
S+T V PYDS YG+ + N A++ D + P
Sbjct: 428 SDTAEVEEVAPYDSDYGNVYVENLEAEDQDTQLNP 462
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 457 IFLQFHSFSQLIFKIIVSIWLMLPVLRIFAVNTEILLIFCSSPHC 323
IFL + Q + K + +WLM P+ R + ++ C + C
Sbjct: 83 IFLMEVTVGQYLQKGAMEMWLMCPLFRGVGIGNVVIAFMCIAYFC 127
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 457 IFLQFHSFSQLIFKIIVSIWLMLPVLRIFAVNTEILLIFCSSPHC 323
IFL + Q + K + +WLM P+ R + ++ C + C
Sbjct: 83 IFLMEVTVGQYLQKGAMEMWLMCPLFRGVGIGNVVIAFMCIAYFC 127
>AF045645-2|AAC02609.1| 299|Caenorhabditis elegans Hypothetical
protein K02D7.5 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 397 LMLPVLRIFAVNTEILLIFCSSPHC 323
++L VL I A+ T I L FC P C
Sbjct: 4 VVLQVLSISAITTTIALFFCGIPIC 28
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 457 IFLQFHSFSQLIFKIIVSIWLMLPVLRIFAVNTEILLIFCSSPHC 323
IFL + Q + K + +WLM P+ R + ++ C + C
Sbjct: 83 IFLMEVTVGQYLQKGAMEMWLMCPLFRGVGIGNVVIAFMCIAYFC 127
>AF022971-2|AAG23980.1| 327|Caenorhabditis elegans Seven tm
receptor protein 46 protein.
Length = 327
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 212 YGDTHYYNYFADNWDLNIYPTTRF 283
Y D + N F D++DL+I T RF
Sbjct: 157 YSDDYLRNTFLDSYDLDITQTARF 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,832
Number of Sequences: 27780
Number of extensions: 217489
Number of successful extensions: 665
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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