Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A17
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   0.70 
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   3.7  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    24   6.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   6.5  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    23   8.6  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    23   8.6  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    23   8.6  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    23   8.6  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 216 YKSKRFPKHLPKLRKLELSDNRISNGAEFSQWLVKN 323
           Y+ +RF   L K+R+  ++D   S   EF+ WL K+
Sbjct: 585 YEDRRFNDGLIKIREYLVNDIEPSTFWEFTTWLCKH 620


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 246 PKLRKLELSDNRISNGAEFSQWLVK 320
           PKL  L L++NRI++ ++   W  K
Sbjct: 240 PKLLNLSLANNRITSLSDLDPWSPK 264


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 322 FLTSH*ENSAPFDILLSDNSNFLSLGKCLGNLLD 221
           F TS+   ++    LL  N N  S   CL NLLD
Sbjct: 308 FDTSYIPGTSFIGALLLLNMNLTSAFNCLANLLD 341


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 1242

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 84 DQPLFHFCKSVEFTLYVTVDSSIKYL 7
          D PLFH CK      YV  +  +++L
Sbjct: 18 DSPLFHPCKCTGSIRYVHQECLVEWL 43


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  SVNSTDLQKWKRGWSWNYGGGI 106
           +++ + L  W+ GW   YG G+
Sbjct: 522 AIHPSALAYWRLGWMHEYGVGV 543


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  EKRLVLELRGRNPSQVKELNLDNCRS 147
           +KRL LE+   +    K  NL++C+S
Sbjct: 214 DKRLQLEMAKLDVESAKPENLEHCKS 239


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +1

Query: 61  TEMEKRLVLELRGRNPSQVKELNLDNCRS--TNIVG-LSDQYTNLEILSLNNAGLTNLKG 231
           T + + L+ +L  +N + V  +N  N  S   NI+  +SD   NL+ L++ N GL    G
Sbjct: 105 TRISEPLIGKLLYQNLNLVT-INFSNIFSLPANILEYISDNCPNLKALNIGNCGLVEDTG 163

Query: 232 FPSI---CP 249
              I   CP
Sbjct: 164 MVQIIKRCP 172


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 218 VRPALFKLRISRFVY*SESPTMLVLR 141
           V PA +  R  +FV  S  PT+LVL+
Sbjct: 645 VPPAEYASRFYKFVESSIKPTLLVLK 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,450
Number of Sequences: 5004
Number of extensions: 25257
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)