Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A17
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0405 - 2952434-2955583                                           29   0.84 
01_05_0140 - 18528312-18528353,18528426-18529052,18529914-185299...    29   1.1  
05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867...    28   1.5  
01_03_0282 - 14580875-14580891,14582126-14585855                       27   3.4  
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638...    27   4.5  
02_02_0190 - 7630282-7630287,7630383-7630547,7630641-7630691,763...    26   5.9  
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324...    26   5.9  

>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 127 NLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLK 228
           NL NC S  I+ L++   + E++ +N + L NLK
Sbjct: 320 NLSNCTSLKIIDLNNNNFSGELIYVNFSNLPNLK 353


>01_05_0140 -
           18528312-18528353,18528426-18529052,18529914-18529962,
           18530086-18530108
          Length = 246

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 82  VLELRGRNPSQVKELNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLKGFPSICP 249
           +L L   NP+ + EL + +CR    +G    + +LE L L +  L  L+      P
Sbjct: 155 LLSLHLCNPAVLTELEISDCRGFMYIGGLRNFRDLESLKLLHCPLLQLRDLMPAAP 210


>05_05_0210 -
           23285241-23285338,23286297-23286447,23286660-23286748,
           23287108-23288394,23288460-23288516,23289446-23289644,
           23290240-23290342,23291048-23291229,23291850-23291899,
           23292192-23292360
          Length = 794

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 8   KYFIDESTVTYSVNSTDLQKWKRGWSWNYGGG 103
           K F+D  TVTYS + T        WSW +G G
Sbjct: 712 KNFLDRVTVTYSTSRT-------SWSWTHGHG 736


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 283  ILLSDNSNFLSLGKCLGNLLDL 218
            + +SD  N  SLG CLGNL  L
Sbjct: 1158 LYISDCKNLRSLGPCLGNLPSL 1179


>07_03_0627 -
           20061951-20062391,20062912-20062960,20063386-20063851,
           20063933-20064139,20064267-20064405,20065146-20065282,
           20065414-20065657,20065808-20065969,20066049-20066167,
           20066240-20066314,20066327-20066500,20066607-20066769,
           20067211-20067420,20067515-20067668,20067761-20067839,
           20067999-20068146,20068501-20068671,20068771-20069385
          Length = 1250

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 130 LDNCRSTNIVGLSDQYTNLEILSLNNAGLTN 222
           +D   +T +  L+D + ++ +LSL N GL N
Sbjct: 176 VDGAAATGVPVLADHWRSVAVLSLCNCGLLN 206


>02_02_0190 -
           7630282-7630287,7630383-7630547,7630641-7630691,
           7630955-7631128,7631882-7632116,7632224-7632306,
           7633826-7633866,7633986-7634067
          Length = 278

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 231 FPKHLPKLRKLELSDNRISNGAE 299
           F + LPKL  L L++NR++N AE
Sbjct: 77  FLEFLPKLHTLVLTNNRLTNLAE 99


>01_01_0426 +
           3234987-3235935,3236744-3236782,3237044-3237409,
           3240871-3242315
          Length = 932

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = +1

Query: 103 NPSQVKELNLDNC-----RSTNIVGLSDQYTNLEILSLNNAGLT 219
           N S ++EL+LD+      RS+  + L+D    LEILSL+  G++
Sbjct: 3   NLSNLRELHLDDVNILSSRSSWSLILADNTPQLEILSLSQCGIS 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,071,779
Number of Sequences: 37544
Number of extensions: 147531
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)