Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A17
         (323 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)                   65   1e-11
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 28   1.5  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.0  
SB_37509| Best HMM Match : PAE (HMM E-Value=0)                         26   6.1  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         26   6.1  

>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
          Length = 219

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = +1

Query: 94  RGRNPSQ--VKELNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLKGFPSICPS*ENWS 267
           RG  P+   + EL LDNCRST+IVGL+D++  LEILS+ N GLT LK FP + P+     
Sbjct: 8   RGSKPAARPITELILDNCRSTSIVGLTDEFVKLEILSMINVGLTTLKNFPKL-PNLRKLE 66

Query: 268 YLTTEYQTGLNFLSG 312
                  +GL  L+G
Sbjct: 67  LSDNRISSGLQNLTG 81


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 124 LNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNL 225
           L+L+NC  T+I  +     +LE L LNN  LT++
Sbjct: 527 LSLENCNLTSIPDVVFHLESLEKLDLNNNKLTSI 560


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 100  RNPSQVKELNLDNCRSTNI-VGLSDQYTNLEILSLNNAGLTNLKG 231
            RNP ++K LNL +   T +  G+ ++   L  LSL N  +T LKG
Sbjct: 1092 RNP-KLKWLNLSSNNLTILDTGMLERLPELRYLSLENNNITCLKG 1135


>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
          Length = 483

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 222 SKRFPKHLPKLRKLELSDNRISNGAEFSQW 311
           SK FP+H PKL+ +   D RI+   +F  W
Sbjct: 145 SKYFPEHPPKLQGVLSGDARIN--PDFHDW 172


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 222 SKRFPKHLPKLRKLELSDNRISNGAEFSQW 311
           SK FP+H PKL+ +   D RI+   +F  W
Sbjct: 914 SKYFPEHPPKLQGVLSGDARIN--PDFHDW 941


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,131
Number of Sequences: 59808
Number of extensions: 173741
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)