Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A17
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   6.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 259 NWSYLTTEYQTG 294
           NWSY++T Y  G
Sbjct: 137 NWSYVSTVYSEG 148


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 259 NWSYLTTEYQTG 294
           NWSY++T Y  G
Sbjct: 227 NWSYVSTVYSEG 238


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 17  IDESTVTYSVNSTDLQKWK 73
           IDE+++TY+ +    Q WK
Sbjct: 75  IDENSMTYAADIFFAQTWK 93


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 KHLPKLRKLELSDNRISN 290
           + L  L+ L+L +NRISN
Sbjct: 451 RDLALLKTLDLGENRISN 468



 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 181 NLEILSLNNAGLTNLKGF 234
           NL+IL L +  +  LKGF
Sbjct: 843 NLQILHLEDNRIRELKGF 860


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 17  IDESTVTYSVNSTDLQKW 70
           ID+ T+ YSV  T  ++W
Sbjct: 73  IDDVTMEYSVQLTFREQW 90


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 256 ENWSYLTTEYQTGLN 300
           +NW  + T Y++GLN
Sbjct: 436 KNWLPVHTSYKSGLN 450


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 256 LSLGKCLGNLLDL*DQHYLS 197
           +S G C+  LL+    HY +
Sbjct: 313 MSFGYCIATLLEFAGVHYFT 332


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 210 WSYKSKRFPKHLPKLRK 260
           W YKSK   +H  K +K
Sbjct: 199 WVYKSKASEEHGNKKKK 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,019
Number of Sequences: 438
Number of extensions: 1500
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)