Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A16
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9N667 Cluster: Putative uncharacterized protein; n=3; ...    33   3.6  
UniRef50_UPI000150A152 Cluster: hypothetical protein TTHERM_0084...    32   6.3  
UniRef50_A5TUD1 Cluster: Possible helicase; n=1; Fusobacterium n...    32   6.3  

>UniRef50_Q9N667 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 381

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -1

Query: 230 SMAEIVLSIFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITT 51
           S  EI + I +    H+   +  + + Q    +H NIVRL  +  ++ EGR+     +  
Sbjct: 49  SNQEIDIVIKKTWPRHKGCPMEVKILGQLGKLKHRNIVRLLYSYQKQHEGRI----CLAL 104

Query: 50  IFLFVPCNILQF 15
           IF ++P N+ QF
Sbjct: 105 IFEYIPLNLYQF 116


>UniRef50_UPI000150A152 Cluster: hypothetical protein
           TTHERM_00840180; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00840180 - Tetrahymena
           thermophila SB210
          Length = 436

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 495 FRIRFLKPAVCRMSQMIKEIKNIIFLAKHHIARSFDKCIKYIFIFFIESLNLDM 334
           F++ FL   + + SQ+ KEIK ++   K  I     +  K  F  F+   N+D+
Sbjct: 52  FKVNFLLKTILQESQIDKEIKKVVMYDKETIVYITQEAKKIKFFNFVRCENVDI 105


>UniRef50_A5TUD1 Cluster: Possible helicase; n=1; Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953|Rep: Possible
           helicase - Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953
          Length = 790

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = -3

Query: 438 IKNIIFLAKHHIARSFDKCIKYIFIFFIESLNLDMERLFNYTRAYK 301
           +K  IFLAK +  +  +K  K +F+F+ +SL   +++LFN  + Y+
Sbjct: 37  VKRAIFLAKEY--KYVEKNDKILFLFYNKSLKNTIQKLFNSDKNYE 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,347,445
Number of Sequences: 1657284
Number of extensions: 6586537
Number of successful extensions: 14615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14612
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)