Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A16
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0108 - 5361431-5362405                                           29   2.1  
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    27   8.5  

>10_02_0108 - 5361431-5362405
          Length = 324

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 90  LLPSCRTETDDVSVPRRF*LVNPLSSQFIRLVR 188
           LL  C T  D +S+PR F + NP+S + + LVR
Sbjct: 128 LLLLCSTFNDRMSIPRNFVVANPVSGRSV-LVR 159


>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 435 KNIIFLAKHHIARSFDKCIKYIFIFFIESLNLDMERLFNYTRAYK 301
           KN     +H  + S       +FIF I  ++  +   F+YT AY+
Sbjct: 20  KNATLTWRHRRSASLQLLSSLVFIFLIFCIDRAIRSRFSYTTAYR 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,306,397
Number of Sequences: 37544
Number of extensions: 161352
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)