Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A16
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_42902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_29599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_57846| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_52746| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_46959| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   8.7  
SB_15925| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 106  GQRRTMLACRVVSDWLIP 159
            G+R T+L+ RVVSDW IP
Sbjct: 1020 GRRTTVLSMRVVSDWSIP 1037


>SB_42902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 206 IFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITTIFLFVPCN 27
           IF  L  H+ +   T+G  + E  +H    R+C TT  + + R+ I    + + L    N
Sbjct: 27  IFSILDQHKAF---TEGCKEPEGPKHRYFRRICSTTLLQGKYRIQIISKASKLILLAVYN 83

Query: 26  ILQ 18
             Q
Sbjct: 84  AYQ 86


>SB_29599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 206 IFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIY 66
           IF  L  H+ +   T+G  + E  +H  + R+C TT  + +   H Y
Sbjct: 27  IFSILDQHKAF---TEGCKEPEGPKHRYVRRICCTTLLQEQNGNHTY 70


>SB_57846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 206 IFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIY 66
           IF  L  H+ +   T+G  + E  +H    R+C TT  + +   H Y
Sbjct: 27  IFSILDQHKAF---TEGCKEPEGPKHRYFRRICCTTLLQEQNGNHTY 70


>SB_52746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -1

Query: 206 IFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITTIFLFVPCN 27
           IF  L  H+ +   T+G  + E  +H    R+C TT  + + R+ I    + + L    N
Sbjct: 63  IFSILDQHKAF---TEGCKEPEGPKHRYFRRICCTTLLQGKYRIQIISKASKLILQAVYN 119

Query: 26  ILQFTFYN 3
             Q   ++
Sbjct: 120 AYQACIFS 127


>SB_46959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 206 IFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIY 66
           IF  L  H+ +   T+G  + E  +H    R+C TT  + +   H Y
Sbjct: 101 IFSILDQHKAF---TEGCKEPEGPKHRYFRRICCTTLLQEQNGNHTY 144


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 347  NDSIKKIKIYFIHLSNDLAIWCLAKKIMFLISF 445
            ND+ KK+K   IH+ + +  +  A K + +I+F
Sbjct: 1010 NDAFKKVKTQDIHVDSQVYAYLRADKYLVVINF 1042


>SB_15925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 206 IFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIY 66
           IF  L  H+ +   T+G  + E  +H    R+C TT  + +   H Y
Sbjct: 27  IFSILDQHKAF---TEGCKEPEGPKHRYFRRICCTTLLQEQNGNHTY 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,067
Number of Sequences: 59808
Number of extensions: 205056
Number of successful extensions: 462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)