Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A16
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical p...    33   0.12 
AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical ...    33   0.12 
Z80215-8|CAB02275.1|  381|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    28   3.3  

>Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -1

Query: 230 SMAEIVLSIFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITT 51
           S  EI + I +    H+   +  + + Q    +H NIVRL  +  ++ EGR+     +  
Sbjct: 49  SNQEIDIVIKKTWPRHKGCPMEVKILGQLGKLKHRNIVRLLYSYQKQHEGRI----CLAL 104

Query: 50  IFLFVPCNILQF 15
           IF ++P N+ QF
Sbjct: 105 IFEYIPLNLYQF 116


>AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -1

Query: 230 SMAEIVLSIFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITT 51
           S  EI + I +    H+   +  + + Q    +H NIVRL  +  ++ EGR+     +  
Sbjct: 49  SNQEIDIVIKKTWPRHKGCPMEVKILGQLGKLKHRNIVRLLYSYQKQHEGRI----CLAL 104

Query: 50  IFLFVPCNILQF 15
           IF ++P N+ QF
Sbjct: 105 IFEYIPLNLYQF 116


>Z80215-8|CAB02275.1|  381|Caenorhabditis elegans Hypothetical
           protein C36B1.10 protein.
          Length = 381

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = -1

Query: 233 NSMAEIVLSIFRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTIT 54
           N   EIV+   +    H+   L  + + +    +H NIVRL  +  ++ EGR+     + 
Sbjct: 50  NHQMEIVIK--KTWPRHKGCPLEVKILGKLGKLKHKNIVRLLFSYQKQHEGRI----CLG 103

Query: 53  TIFLFVPCNILQF 15
            IF ++P N+ QF
Sbjct: 104 LIFEYIPMNLHQF 116


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
          protein F26G1.1 protein.
          Length = 1021

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 76 YTFIILLLRYFCSFLATFY 20
          +TF++LLL YFC+ + ++Y
Sbjct: 4  FTFVVLLLFYFCNTVFSYY 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,745
Number of Sequences: 27780
Number of extensions: 166184
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)