Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_A15
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    29   0.65 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    29   0.65 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.6  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    26   3.5  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   3.5  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   4.6  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   4.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.6  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   6.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.1  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    25   6.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.1  

>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +3

Query: 78  DGPTY--PGRTPGMLEVGMC---ESLSRK 149
           DGP +  P + PG++EVG C   E LS+K
Sbjct: 314 DGPAHIEPSQVPGLMEVGWCKEMEELSKK 342


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 204  WRFSSVSPTLIWCVTASHTCVRDFHTSPLPTFPGFSLGRLDHLVRKCIPLQKKIVLN 34
            WR   + P +IW  T    CV+  + S        S G  D  + + I L ++I  N
Sbjct: 839  WRDPQIEPLIIWIKTVHQFCVKSLNISRDQDVLTISTGGDDGAISRSILLLEQISEN 895


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 358 ISLLTKGPFEYYVNKIVGHQSDTGATRSSALLCRIAPTEG 239
           I LLT GP  Y++  I+       +  + A +C   PT G
Sbjct: 70  IGLLTGGPSAYWITYIIAIPLQLISAATMAEVCSALPTAG 109


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 190 RREAPTLPTKPTGSSRHLPWVQYGIATHSTALPQYH 297
           + EA TLP K  G+   LPW     A     +P++H
Sbjct: 172 KNEALTLPPKSLGTFARLPWASELKAI--VVIPEFH 205


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 516 HKDPPAADSASTTVTKVYLEDYFALY 439
           H  PPA  SA    TK+YL D  A Y
Sbjct: 377 HYSPPATGSAIIDPTKIYLCDSGAQY 402


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 188 TDEKRQHYPLNPPVPPA 238
           ++ K  H P NPP+PP+
Sbjct: 751 SEYKNDHDPRNPPIPPS 767


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
 Frame = -1

Query: 358 ISLLTKGPFEYYVNKIVGHQSDTGATRSSALLCRIAPTEGGGR---NRXXXXXXXXXXVG 188
           + +++K   + YV +++G   ++G     A L  +APT G  R   +             
Sbjct: 177 VHMISKSLKKEYVARVIGEFPNSGEVICDAPLLTVAPTLGLNRIHPDGKEASTVFKRIAF 236

Query: 187 ESHTNLV-CDSLS----HLRERLSHI--PTSNIP 107
           + HT+LV C  L+     LR  L ++  P +N P
Sbjct: 237 DGHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDP 270


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 355 ILEERVIWQIPNDPVYVFFLSNNDNE 432
           +L+ R++W +    +YV+  S ++NE
Sbjct: 601 VLDNRLLWVVVGKSIYVYDPSTSENE 626


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 328 YYVNKIVGHQSDTGATRSSALLCRIAPTEGGGRNR 224
           Y V++  GHQ+   +  +   L RI    GGG +R
Sbjct: 52  YAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHR 86


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 457 RLLCSLYSIHYHYSKEKKRKRDH 389
           +L  SL+S +  Y K KK KR H
Sbjct: 558 KLFSSLFSNNVSYKKSKKLKRTH 580


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 328 YYVNKIVGHQSDTGATRSSALLCRIAPTEGGGRNR 224
           Y V++  GHQ+   +  +   L RI    GGG +R
Sbjct: 52  YAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHR 86


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = -2

Query: 204 WRFSSVSPTLIWCVTASHTCVRDFHTSPL--PTFPGFSLGRLDHLVRKCIP 58
           W F++++ T+ W V   H   R F    +    F  F L     LV  C P
Sbjct: 367 WIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHP 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,919
Number of Sequences: 5004
Number of extensions: 61354
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)